View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_low_14 (Length: 342)
Name: NF13916_low_14
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 26882937 - 26882626
Alignment:
| Q |
17 |
tacaaatgagtagttcacttataagagtctagataactttcatcatgatgaatcataatttgttagtagttagagtgtatagaatatgtcaatttctatt |
116 |
Q |
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| T |
26882937 |
tacaaataagtagttcacttataagagtctagataattttcatcatgatgaatcataatttgttagtagttagagtgtatagaatatgtcaatttctatt |
26882838 |
T |
|
| Q |
117 |
aggctaaacttatataaatataattagtgaatgaaataatacataaaaaatattaaggaagtannnnnnngagaaatgaaaattgaggactaactgatgc |
216 |
Q |
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| T |
26882837 |
aggctaaacttatataaatataattagtgaatgaaataatacataaaaaatattaaggaagtatttttttgagaaatgaaaattgaggactaactgatgc |
26882738 |
T |
|
| Q |
217 |
ataaccgccaactgttgtcccatttgactg--gagaagaaaaattgttacatccaacaattagaaatttattgaaatcatgggaatatatgaaaggactg |
314 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26882737 |
ataaccgccaactgttgtcccatttgactgaagagaagaaaaattgttacatccaacaattagaaatttattgaaatcatgggaatatatgaaaggactg |
26882638 |
T |
|
| Q |
315 |
tctctaagattt |
326 |
Q |
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|||||||||||| |
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| T |
26882637 |
tctctaagattt |
26882626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 31 - 326
Target Start/End: Complemental strand, 26885733 - 26885435
Alignment:
| Q |
31 |
tcacttataagagtctagataactttcatcatgatgaatcataatttgttagtagttagagtgtatagaatatgtcaatttctattaggctaaacttata |
130 |
Q |
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||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26885733 |
tcacttagaagaatctagataattttcatcacaatgaatcataatttgttagttgttagagtgtatagaatatgtcaatttctattaggctaaacttata |
26885634 |
T |
|
| Q |
131 |
taaatataattagtgaatgaaataa-tacataaaaaatattaaggaagtannnnnnngagaaatgaaaattgaggactaactgatgcataaccgccaact |
229 |
Q |
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| T |
26885633 |
taaatataattagtgaatgaaaaaattccttaaaaaatattaaggaaatatttttttgagaaattaaaattgaggactaattgatgcacaaccgccaact |
26885534 |
T |
|
| Q |
230 |
gttgtcccatttgactg--gagaagaaaaattgttacatccaacaattagaaatttattgaaatcatgggaatatatgaaaggactgtctctaagattt |
326 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26885533 |
gttgtcccattcgactgaagagaagaaaaattgttacatccaaaagctagaaatttattcaaatcatgggaatatatgaaaggactgtctctaagattt |
26885435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 11848207 - 11848152
Alignment:
| Q |
257 |
attgttacatccaacaattagaaatttattgaaatcatgggaatatatgaaaggac |
312 |
Q |
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|||||||||||||||| ||||||||| ||| |||| || |||||||||||||||| |
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| T |
11848207 |
attgttacatccaacagctagaaatttgttgtaatcctgtgaatatatgaaaggac |
11848152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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