View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_low_15 (Length: 337)
Name: NF13916_low_15
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 6535392 - 6535701
Alignment:
| Q |
1 |
cttaaaaatataatcgtataattaatatttaactatttacaaataagaaaaataggtaaaactgagagaaaaataataagcttacagctttaagctactt |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
6535392 |
cttaaaaatataatcgtataattaatatttaattatttacaaataagaaaaatagataaaactgagagaaaaataataaacttacaactttaagctactt |
6535491 |
T |
|
| Q |
101 |
caaactacatatctataagttaataaaagtaagttataaactcgtaaaaaacatgataactattgaacatatcttttttagttatatcacattatcagct |
200 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
6535492 |
caa---acatatctataagttagtaaaagtaagttataaactcgtaaaaaacatgatgactattcaacatatcttttttagttatatcacattatcag-- |
6535586 |
T |
|
| Q |
201 |
ataaactagcttattatacttgtcaaacaaaccctaagaactcccttccttcctttctttcctt-nnnnnnnnnnctcctttatgatacttttttgtggt |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
6535587 |
-----ctagtttattatacttgtcaaacaaaccctaagaactcccttccttcctctctttccttaaaaaaaaaaactcctttatgatacttttttgtggt |
6535681 |
T |
|
| Q |
300 |
aactcctttatgatactaat |
319 |
Q |
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|||||||||||||||||||| |
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| T |
6535682 |
aactcctttatgatactaat |
6535701 |
T |
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