View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13916_low_16 (Length: 329)

Name: NF13916_low_16
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13916_low_16
NF13916_low_16
[»] chr8 (3 HSPs)
chr8 (44-108)||(7371799-7371863)
chr8 (193-240)||(4529856-4529903)
chr8 (269-311)||(2238551-2238592)
[»] chr1 (5 HSPs)
chr1 (193-240)||(29523376-29523423)
chr1 (202-240)||(11066005-11066043)
chr1 (199-240)||(25009606-25009647)
chr1 (199-240)||(30685525-30685566)
chr1 (193-238)||(38646077-38646122)
[»] chr3 (1 HSPs)
chr3 (193-238)||(48169448-48169493)
[»] chr2 (1 HSPs)
chr2 (193-240)||(37724246-37724293)
[»] chr7 (2 HSPs)
chr7 (269-311)||(35084013-35084055)
chr7 (204-240)||(40799990-40800026)


Alignment Details
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 7371799 - 7371863
Alignment:
Q  44 aatgggtataccaacttttgttgggcggtctaaaaatcaagtgtttaatattggtgcatttctca 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7371799 aatgggtataccaacttttgttgggcggtctaaaaaccaagtgtttaatattggtgcatttctca 7371863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 4529903 - 4529856
Alignment:
Q  193 gtaattaataatacattaaaaagtgataatgacattcattttgaaaca 240  Q
    |||||||||| |||||| |||||||| ||||||||||||||| |||||    
T  4529903 gtaattaatagtacattgaaaagtgagaatgacattcattttaaaaca 4529856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 2238592 - 2238551
Alignment:
Q  269 gtgaatttgtgttttttagcttataaattgagacagagggagt 311  Q
    ||||||||||||||||| |||||||||||||||| ||||||||    
T  2238592 gtgaatttgtgtttttt-gcttataaattgagacggagggagt 2238551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 29523376 - 29523423
Alignment:
Q  193 gtaattaataatacattaaaaagtgataatgacattcattttgaaaca 240  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||||    
T  29523376 gtaattaatagtacattgaaaagtgagaatgacattcattttgaaaca 29523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 11066043 - 11066005
Alignment:
Q  202 aatacattaaaaagtgataatgacattcattttgaaaca 240  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  11066043 aatacattgaaaagtgagaatgacattcattttgaaaca 11066005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 25009647 - 25009606
Alignment:
Q  199 aataatacattaaaaagtgataatgacattcattttgaaaca 240  Q
    |||| ||||||||||||||||||| ||||||||||| |||||    
T  25009647 aatactacattaaaaagtgataattacattcatttttaaaca 25009606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 30685566 - 30685525
Alignment:
Q  199 aataatacattaaaaagtgataatgacattcattttgaaaca 240  Q
    |||| |||||| |||||||| |||||||||||||||||||||    
T  30685566 aatagtacattgaaaagtgagaatgacattcattttgaaaca 30685525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 38646077 - 38646122
Alignment:
Q  193 gtaattaataatacattaaaaagtgataatgacattcattttgaaa 238  Q
    |||||||||| |||| | ||||||||||||||||| ||||||||||    
T  38646077 gtaattaatagtacaatgaaaagtgataatgacatacattttgaaa 38646122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 48169493 - 48169448
Alignment:
Q  193 gtaattaataatacattaaaaagtgataatgacattcattttgaaa 238  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||    
T  48169493 gtaattaatagtacattgaaaagtgaaaatgacattcattttgaaa 48169448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 37724293 - 37724246
Alignment:
Q  193 gtaattaataatacattaaaaagtgataatgacattcattttgaaaca 240  Q
    |||||||||| |||||| |||||||| ||||||||| |||||||||||    
T  37724293 gtaattaatagtacattgaaaagtgaaaatgacatttattttgaaaca 37724246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 35084055 - 35084013
Alignment:
Q  269 gtgaatttgtgttttttagcttataaattgagacagagggagt 311  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||    
T  35084055 gtgaatttgtgtttttttgcttataaattgggacggagggagt 35084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 40800026 - 40799990
Alignment:
Q  204 tacattaaaaagtgataatgacattcattttgaaaca 240  Q
    |||||| |||||||| |||||||||||||||||||||    
T  40800026 tacattgaaaagtgagaatgacattcattttgaaaca 40799990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University