View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_low_2 (Length: 780)
Name: NF13916_low_2
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_2 |
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| [»] scaffold0009 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 18 - 763
Target Start/End: Original strand, 28283632 - 28284369
Alignment:
| Q |
18 |
aagaaataggtggatgaattgcaagactactctaagaagtattgagtgtattgagtgtcaccgtacccatatgcatagagaaggaaatgttgttgtagac |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
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| T |
28283632 |
aagaaataggtggatgaattgcaagactactctaagaagtattgagtgg-----gtg-----gtacccatatacatagagaaggaaatgttgttgtagat |
28283721 |
T |
|
| Q |
118 |
gctttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283722 |
gctttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcac |
28283821 |
T |
|
| Q |
218 |
cactcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283822 |
cactcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaag |
28283921 |
T |
|
| Q |
318 |
cgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283922 |
cgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaag |
28284021 |
T |
|
| Q |
418 |
tatgaagttctgtgaatagcataatgtattaatgttaaaaatatatttaacctaaaatgatatatat--acactaacatattctaatggatgaatatata |
515 |
Q |
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| T |
28284022 |
tatgaagttctgtgaataacataatgtattaatgttaaaaatatatttaacctaaaatgatatatatacacactaacatattctaatggatgaatatata |
28284121 |
T |
|
| Q |
516 |
tcattaaaatgcagaactgcaaagttgaattaaggaatttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactca |
615 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |
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| T |
28284122 |
tcataaaaatgcagaactgcaaagttgaattaaggaatttacttgtcaaattcagggtgcatggtgttatcccaccctttaggatcaacaacattactca |
28284221 |
T |
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| Q |
616 |
tagttgagtaagcaaagataattttaggataagtcatccatgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagta |
715 |
Q |
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| T |
28284222 |
tagttgagtaagcaaagataattttaggataagtcatccatgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagta |
28284321 |
T |
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| Q |
716 |
taaatcagcatctgatacactttttcttgcctgtgctactatcactgt |
763 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28284322 |
taaatcagcatctgatacactttttcttgcctgtgctactatcactgt |
28284369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 150; Significance: 7e-79; HSPs: 4)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 554 - 763
Target Start/End: Complemental strand, 173597 - 173388
Alignment:
| Q |
554 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
653 |
Q |
| |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
173597 |
ttacttgtcaaattcagggtgcatggcgttatcccaccctttgggattaacaacattggtcatagttgagtaagcatagataattttgggataagtcatc |
173498 |
T |
|
| Q |
654 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttgcctgtgcta |
753 |
Q |
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||||| || ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| |
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| T |
173497 |
catgccctagctaagaaagtggaagatccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcagtttttcttgcttgtgcta |
173398 |
T |
|
| Q |
754 |
ctatcactgt |
763 |
Q |
| |
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|||||||||| |
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| T |
173397 |
ctatcactgt |
173388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 554 - 763
Target Start/End: Complemental strand, 179110 - 178901
Alignment:
| Q |
554 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
653 |
Q |
| |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
179110 |
ttacttgtcaaattcagggtgcatggcgttatcccaccctttgggattaacaacattggtcatagttgagtaagcatagataattttgggataagtcatc |
179011 |
T |
|
| Q |
654 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttgcctgtgcta |
753 |
Q |
| |
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||||| || ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| |
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| T |
179010 |
catgccctagctaagaaagtggaagatccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcagtttttcttgcttgtgcta |
178911 |
T |
|
| Q |
754 |
ctatcactgt |
763 |
Q |
| |
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|||||||||| |
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| T |
178910 |
ctatcactgt |
178901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 260 - 432
Target Start/End: Complemental strand, 174488 - 174316
Alignment:
| Q |
260 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttcc |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| | |
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| T |
174488 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttgctttgc |
174389 |
T |
|
| Q |
360 |
gacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
432 |
Q |
| |
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||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
174388 |
aacacttgcacgccctttaggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
174316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 260 - 432
Target Start/End: Complemental strand, 180001 - 179829
Alignment:
| Q |
260 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttcc |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| | |
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| T |
180001 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttgctttgc |
179902 |
T |
|
| Q |
360 |
gacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
432 |
Q |
| |
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||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
179901 |
aacacttgcacgccctttaggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
179829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 7e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 554 - 763
Target Start/End: Original strand, 31114225 - 31114434
Alignment:
| Q |
554 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
653 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31114225 |
ttacttgtcaaattcagggtgcatgccattatcccatccttttggatgaacaacattggtcatagttgagtaagcatagataattttaggataagtcatc |
31114324 |
T |
|
| Q |
654 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttgcctgtgcta |
753 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
31114325 |
catgctctagctaagaaagtagtagttccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcactttttcttgcttgtgcta |
31114424 |
T |
|
| Q |
754 |
ctatcactgt |
763 |
Q |
| |
|
|||||||||| |
|
|
| T |
31114425 |
ctatcactgt |
31114434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 212 - 450
Target Start/End: Original strand, 31113912 - 31114154
Alignment:
| Q |
212 |
attcaccactcactaaaatgcggggtgcacgacaaaactcttcaagccacat----taattagacttttggaggaggaaggagccatttagatccttgaa |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31113912 |
attcaccactcactaaaatgtggggtgcaaggcaaaactcttgaagccacatacattaattagacttttggaggaggaaggagccattttgatccttgaa |
31114011 |
T |
|
| Q |
308 |
tcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgata |
407 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||| ||| || | || |||| ||||| |||||||| |||||||||||||| ||||| |
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| T |
31114012 |
tcattccaagtgtaatgaaaggtttaacctctgcttcacttagttgctttgtgatacttacacgccctttcggatctgattttggtcctgtgttttgata |
31114111 |
T |
|
| Q |
408 |
ttctccaaagtatgaagttctgtgaatagcataatgtattaat |
450 |
Q |
| |
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||||||||||||||| |||||| ||| ||||||||||||| |
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| T |
31114112 |
ttctccaaagtatgatgttctgcagataagataatgtattaat |
31114154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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