View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13916_low_21 (Length: 292)
Name: NF13916_low_21
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_21 |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 61 - 277
Target Start/End: Complemental strand, 98334 - 98118
Alignment:
| Q |
61 |
taaaaagtgaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggt-agtgcgagggaaagagccatcagcacgacgacgatcggca |
159 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||| || |||||||| || ||| |||||||||||||| |
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| T |
98334 |
taaatagtgaaagtgagtaaa-gagtgataacaaccacctgagaggaaatcgtcgcggccagtgcaagagaaagagcgataagcgtgacgacgatcggca |
98236 |
T |
|
| Q |
160 |
acattggactcatcagagtgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctagagagga |
259 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
98235 |
acattggacttatcagagtgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacagagagacctagagagga |
98136 |
T |
|
| Q |
260 |
ggtcggaggagaaaattc |
277 |
Q |
| |
|
|| | ||||||||||||| |
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|
| T |
98135 |
ggccagaggagaaaattc |
98118 |
T |
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Target: scaffold0004 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 277
Target Start/End: Complemental strand, 246633 - 246426
Alignment:
| Q |
71 |
aattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggt-agtgcgagggaaagagccatcagcacgacgacgatcggcaacattggact |
169 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||||| | |
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|
| T |
246633 |
aattgagtgagagagcgataacaactacctgagaggaaatcgtcgcggcgagtgcgagggaaagagcgatcggcacgacgagaatcggcaacattggaat |
246534 |
T |
|
| Q |
170 |
catcagagtgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctagagaggaggtcggagga |
269 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | ||||| |
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|
| T |
246533 |
catcggagcgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacaggacggagagacctggagaggaggcctgagga |
246434 |
T |
|
| Q |
270 |
gaaaattc |
277 |
Q |
| |
|
|||||||| |
|
|
| T |
246433 |
gaaaattc |
246426 |
T |
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Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 66 - 277
Target Start/End: Original strand, 10495856 - 10496068
Alignment:
| Q |
66 |
agtgaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggta-gtgcgagggaaagagccatcagcacgacgacgatcggcaacatt |
164 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||| |||||||| |
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|
| T |
10495856 |
agtgaatttgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggaaagtgcgagggaaagagcgatcagcgcgacgacgatcagcaacatt |
10495955 |
T |
|
| Q |
165 |
ggactcatcagagtgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctagagaggaggtcg |
264 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| ||| |||||||||||||||||| | ||||||||||||||| |||||||||| |||||||| || |
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|
| T |
10495956 |
ggactcattagagtgttcatcgtactagcgcatggtgttagtgttgaatgaacgggaaacagaagaggcaacgggatagagagacctatagaggaggccg |
10496055 |
T |
|
| Q |
265 |
gaggagaaaattc |
277 |
Q |
| |
|
||||||||||| |
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|
| T |
10496056 |
cgggagaaaattc |
10496068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 2986143 - 2986013
Alignment:
| Q |
147 |
acgacgatcggcaacattggactcatcagagtgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggaga |
246 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | ||| |
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|
| T |
2986143 |
acgacgatcggaaacattggactcatctgagtgttcctcgtactggcgcatgatgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaaga |
2986044 |
T |
|
| Q |
247 |
gacctagagaggaggtcggaggagaaaattc |
277 |
Q |
| |
|
||||||||||||||| | |||||||||||| |
|
|
| T |
2986043 |
gacctagagaggaggcagcaggagaaaattc |
2986013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 2986194 - 2986154
Alignment:
| Q |
69 |
gaaattgagtaaaagagtgataacaactacctgagaggaaa |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
2986194 |
gaaattgagtaaaagagcgataacaactacttgagaggaaa |
2986154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 66 - 254
Target Start/End: Complemental strand, 44162145 - 44161950
Alignment:
| Q |
66 |
agtgaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggt-agtgcgagggaaagagccatcagcacgacgacgatcggcaacatt |
164 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44162145 |
agtgaaattgagtaaaagagcgataacaactaccggagaggaaattgtcgcggagagtgcgagggaaagagcgatcagcacgacgacgatcggcaacatt |
44162046 |
T |
|
| Q |
165 |
ggactcatcagagtgttcgtcgtactggcgcatgg------cgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctaga |
254 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
44162045 |
ggactcatcagagtgttcatcatactggcgcatggtgttgatgttggtgttgaatgaacgggaagcggaagaagcaacgggacatagagacctaga |
44161950 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 69 - 277
Target Start/End: Complemental strand, 26721077 - 26720873
Alignment:
| Q |
69 |
gaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggt-agtgcgagggaaagagccatcagcacgacgacgatcggcaacattgga |
167 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
26721077 |
gaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggcgagtgtgagggaaagagccatca-----acgacaatcggaaacattgga |
26720983 |
T |
|
| Q |
168 |
ctcatcagagtgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctagagaggaggtcggag |
267 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||||||||||||||| ||||| | |
|
|
| T |
26720982 |
ctcatctgagtgttcctcgcactggcgcatggtgttggtgttgaatgaacgggaatcaaaagaggcaacgggatgaagagacctagagaggtggtcgcaa |
26720883 |
T |
|
| Q |
268 |
gagaaaattc |
277 |
Q |
| |
|
|||||||||| |
|
|
| T |
26720882 |
gagaaaattc |
26720873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 8541428 - 8541370
Alignment:
| Q |
217 |
cgggaagcggaagaggcaacgggacggagagacctagagaggaggtcggaggagaaaat |
275 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
8541428 |
cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaat |
8541370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 19769313 - 19769220
Alignment:
| Q |
184 |
tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagagacctagagaggaggtcggaggagaaaattc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19769313 |
tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggaaggagagacctagagaggaggccggaggagaaaattc |
19769220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 45117921 - 45118051
Alignment:
| Q |
147 |
acgacgatcggcaacattggactcatcagagtgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggaga |
246 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
45117921 |
acgacgatcggaaacattggacttgtctgagtgttcctcgtactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaaga |
45118020 |
T |
|
| Q |
247 |
gacctagagaggaggtcggaggagaaaattc |
277 |
Q |
| |
|
||||||||||||||| | |||||||||||| |
|
|
| T |
45118021 |
gacctagagaggaggctgcaggagaaaattc |
45118051 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 19769377 - 19769328
Alignment:
| Q |
69 |
gaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19769377 |
gaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcgg |
19769328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 45117870 - 45117910
Alignment:
| Q |
69 |
gaaattgagtaaaagagtgataacaactacctgagaggaaa |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
45117870 |
gaaattgagtaaaagagcgataacaactacttgagaggaaa |
45117910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 9240 - 9322
Alignment:
| Q |
66 |
agtgaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcgg-tagtgcgagggaaagagccatcagcacga |
147 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||||| |
|
|
| T |
9240 |
agtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcgagggaaagagctatcaacacga |
9322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 16359316 - 16359226
Alignment:
| Q |
66 |
agtgaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcgg-tagtgcgagggaaagagccatcagcacgacgacgatc |
155 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||| ||||| ||||| |
|
|
| T |
16359316 |
agtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcaagggaaagagcgatcagcgcgacgtcgatc |
16359226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 23820763 - 23820705
Alignment:
| Q |
217 |
cgggaagcggaagaggcaacgggacggagagacctagagaggaggtcggaggagaaaat |
275 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
23820763 |
cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaat |
23820705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 40172843 - 40172901
Alignment:
| Q |
217 |
cgggaagcggaagaggcaacgggacggagagacctagagaggaggtcggaggagaaaat |
275 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
40172843 |
cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaat |
40172901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 41570013 - 41569950
Alignment:
| Q |
179 |
gttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacg |
242 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
41570013 |
gttcatcgtactggcgcatggcgctggtgttgaatgagcgggaggcggaagaggcggcgggacg |
41569950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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