View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13916_low_22 (Length: 286)

Name: NF13916_low_22
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13916_low_22
NF13916_low_22
[»] chr1 (1 HSPs)
chr1 (4-286)||(37337843-37338125)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 37338125 - 37337843
Alignment:
Q  4 tcttaggaggtgctcccattatatatgctgtattcttagttttcatattaacgtggcnnnnnnnaggagacaaatgtttgttgtgagtatatgaaatggg 103  Q
    |||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |       |||||||||||||||||||||||||  |||||||||    
T  37338125 tcttagcagatgctcccattatatatgctgtattcttaggtttcatattaacgtgactttttataggagacaaatgtttgttgtgagtaactgaaatggg 37338026  T
Q  104 tttagcagactttgaaaacaaagtttcattttgagatcttttcattgctgtatttcccactttatgagcctttggttcaatggtatcacaagaagacttg 203  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37338025 tttagcagactttgaaaacaaagtttcattttgaaatcttttcattgttgtatttcccactttatgagcctttggttcaatggtatcacaagaagacttg 37337926  T
Q  204 tttgacttaagtgccatgtttaaagaatctaagtgacaacataatgaagtggaggagcactgagacaatgaatccaaacccat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37337925 tttgacttaagtgccatgtttaaagaatctaagtgacaacataatgaagtggaggagcactgagacaatgaatccaaacccat 37337843  T

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