View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13916_low_3 (Length: 759)
Name: NF13916_low_3
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 35934788 - 35935418
Alignment:
| Q |
1 |
agcagtggacttatctcctgctttttcatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35934788 |
agcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaact |
35934887 |
T |
|
| Q |
101 |
gcatatattttataatgataaattggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcttaccttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35934888 |
gcatatattttataatgataaattggttaga-tgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcataccttc |
35934986 |
T |
|
| Q |
201 |
actccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctatctcctcaaaggctccatacccaagtgaagaacagcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35934987 |
actccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagcca |
35935086 |
T |
|
| Q |
301 |
ggtcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactcatatgct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35935087 |
ggtcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactcatatact |
35935186 |
T |
|
| Q |
401 |
tgttagtaaaatcaaatgtgttttactactatgtttcactactatgaaaatgaagttatgttattgatcaaacattaagtagtaatcgatcaatacttct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35935187 |
tgttagtaaaatcaaatgtgttttactactatgtttcactactatgaaaatgaagttatgttatcgatcaaacattaagtagtaatcgatcaatacttct |
35935286 |
T |
|
| Q |
501 |
tatcatgtctggtgttgtatattggcttactacagttttagtcgaactattatggttttagagatttatgcaacttcatggtaactgtattcatcggtaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35935287 |
tatcatgtctggtgttgtatattggcttactacagttttagtcgaactattatggttttagacatttatgcaacttcatggtaactgtattcatcggtaa |
35935386 |
T |
|
| Q |
601 |
ttttcacaatttcaaggaacataatgtaaatt |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35935387 |
ttttcacaatttcaaggaacataatgtaaatt |
35935418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 2 - 366
Target Start/End: Original strand, 35927976 - 35928335
Alignment:
| Q |
2 |
gcagtggacttatctcctgctttttcatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactg |
101 |
Q |
| |
|
||||| || |||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
35927976 |
gcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactg |
35928075 |
T |
|
| Q |
102 |
catatattttataatgataaattggttagactgttcatgtctct---taaatgcataatggagaaaacatttaatcatatcgattatgattgtcttacct |
198 |
Q |
| |
|
||||| || ||||||||||| |||| || | ||||||||| ||||||||| || ||||| |||| || ||||||| |||||| | |||| |
|
|
| T |
35928076 |
catat--ttcataatgataaactggtaagt-tattcatgtctaagaataaatgcatcata-agaaacaatttcattctatcgat---gattgtttcacct |
35928168 |
T |
|
| Q |
199 |
tcactccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctatctcctcaaaggctccatacccaagtgaagaacagc |
298 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
35928169 |
tcagtccaagcatattggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagc |
35928268 |
T |
|
| Q |
299 |
caggtcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaa |
366 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||| |||||| | |||||||| ||||| |||||||| |
|
|
| T |
35928269 |
caggtcctgtaagtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagt-taggtaaa |
35928335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 2 - 412
Target Start/End: Original strand, 35940352 - 35940767
Alignment:
| Q |
2 |
gcagtggacttatctcctgctttttcatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactg |
101 |
Q |
| |
|
||||| || |||||||||| ||| ||||||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||| || || |||| |
|
|
| T |
35940352 |
gcagttgatttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactg |
35940451 |
T |
|
| Q |
102 |
catatattttataatgataaa--ttggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgat------tgtct |
193 |
Q |
| |
|
||||| || ||||||||| | || || ||| | |||||||||| |||||||| || ||||| || |||| |||| ||| ||||| ||| | |
|
|
| T |
35940452 |
catat--ttcataatgatataagtttgtaaga-tattcatgtctcagaaatgcatcataaagaaacaatgtaattatattgatgatgatgatgattgttt |
35940548 |
T |
|
| Q |
194 |
taccttcactccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctatctcctcaaaggctccatacccaagtgaaga |
293 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
35940549 |
caccttcattccaagcatatgggttacggtatagtgtttttccatcagagttgactctgaagggtccgagctcctgaaaggctccatacccaagtgaaga |
35940648 |
T |
|
| Q |
294 |
acagccaggtcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactc |
393 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| || ||| ||||| | ||||| |||| |||||||||| | | ||||||||||||||| | || |
|
|
| T |
35940649 |
acagccaggtcctgtgtggttcaaacattatgttgtcgtaatcgaatttgttaaacttgagaggctaggtaaactttttgagcttctgtagactcaaatc |
35940748 |
T |
|
| Q |
394 |
atatgcttgttagtaaaat |
412 |
Q |
| |
|
||| ||||||||| |||| |
|
|
| T |
35940749 |
ataaacttgttagtgaaat |
35940767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 2 - 339
Target Start/End: Original strand, 35910576 - 35910917
Alignment:
| Q |
2 |
gcagtggacttatctcctgctttttcatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactg |
101 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| || || |||| |
|
|
| T |
35910576 |
gcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactg |
35910675 |
T |
|
| Q |
102 |
catatattttataatgataaa--ttggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgat------tgtct |
193 |
Q |
| |
|
||||| || ||||||||| | ||||| ||| | |||||||||| |||||||| || ||||| || |||| |||| ||| ||||| ||| | |
|
|
| T |
35910676 |
catat--ttcataatgatataagttggtaaga-tattcatgtctcagaaatgcatcata-agaaacaatgtaattatattgatgatgatgatgattgttt |
35910771 |
T |
|
| Q |
194 |
taccttcactccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctatctcctcaaaggctccatacccaagtgaaga |
293 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||| || |
|
|
| T |
35910772 |
caccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgagga |
35910871 |
T |
|
| Q |
294 |
acagccaggtcctgtgtgtttcaaatattatgttatcagcatcaaa |
339 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
35910872 |
acagccaggtcctgtgagtttcaaacattatgttgtcagaatcaaa |
35910917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 5 - 356
Target Start/End: Original strand, 35915014 - 35915361
Alignment:
| Q |
5 |
gtggacttatctcctgctttttcatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcat |
104 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||| |||||||||||||| |
|
|
| T |
35915014 |
gtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcat |
35915113 |
T |
|
| Q |
105 |
atattttataatgataaa--ttggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcttaccttcac |
202 |
Q |
| |
|
|| || |||| |||| | ||||| ||| | ||||||||| |||||| || ||||| | ||| | |||| ||| |||||||| ||||||| |
|
|
| T |
35915114 |
at--ttcataaggatataagttggtaaga-taatcatgtctcaggcatgcatcataaagaaataaattagttatattgat---gattgtctcaccttcat |
35915207 |
T |
|
| Q |
203 |
tccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctatctcctcaaaggctccatacccaagtgaagaacagccagg |
302 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| | ||| | |||||||||||| || ||||| ||||| ||||| |
|
|
| T |
35915208 |
tccaagcatatgggttgcggtataatgtttttccatcagaattgactctgaagggtccgagctcttgaaaggctccatatcccagtgaggaacaaccagg |
35915307 |
T |
|
| Q |
303 |
tcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagag |
356 |
Q |
| |
|
||||| | |||||||| |||||||| ||| ||| || |||||||||| |||| |
|
|
| T |
35915308 |
tcctgcgagtttcaaacattatgttgtcaaaatcgaagctttcaaactcgagag |
35915361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 35921382 - 35921768
Alignment:
| Q |
1 |
agcagtggacttatctcctgctttttcatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaact |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || | ||||||||||||||||||||| || ||||||||||| || |||||||||| |||||| ||| |
|
|
| T |
35921382 |
agcagtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccact |
35921481 |
T |
|
| Q |
101 |
gcatatattttataatga--taaattggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcttacct |
198 |
Q |
| |
|
|||||| || |||| || ||| || | ||| | ||||||||| |||||||| || | || ||||| | | |||||||| || || || |||| |
|
|
| T |
35921482 |
gcatat--ttcataaggagttaagtttctaaga-taatcatgtctcagaaatgcatcataaataacacatt-agttatatcgatgatcat---ctcacct |
35921574 |
T |
|
| Q |
199 |
tcactccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctatctcctcaaaggctccatacccaagtgaagaacagc |
298 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| || ||||| ||||| | |
|
|
| T |
35921575 |
tcattccaagcatatgggttacggtataatgttttgccatcagagttgactctgaagggtccgagctcctcaaaggctccatatcccagtgaggaacaac |
35921674 |
T |
|
| Q |
299 |
caggtcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgact |
392 |
Q |
| |
|
||||||||||| |||||||| |||||| | ||| || || | |||||| |||||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
35921675 |
caggtcctgtgagtttcaaacattatgatgtcaaaattgaagctgacaaacttgagagtctaagtaaacttgttgagcttctgtagactcgact |
35921768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 699 - 744
Target Start/End: Original strand, 35935486 - 35935531
Alignment:
| Q |
699 |
ggacaaaagttattatcagcataaaacagtttgtgaggctattttt |
744 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35935486 |
ggacaaaagttattatcagcataaaacagtttgtgaggctattttt |
35935531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 35940803 - 35940898
Alignment:
| Q |
437 |
cactactatgaaaatgaagttatgttattgatcaaacattaagtagtaatcgatcaatacttcttatcatgtctggtgttgtatattggcttacta |
532 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||| ||||| | ||||| || ||| ||||||||| ||| |||||||||| ||| ||||||| |
|
|
| T |
35940803 |
cactactatgaatatgaagttatgtcatcaatcaaatattaactgataatctataaattcttcttatcttgtgtggtgttgtaaatttacttacta |
35940898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 6208979 - 6209023
Alignment:
| Q |
42 |
tgtttgagtaggaaaatcccactcctgctggagactctaagaaga |
86 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaaga |
6209023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 6178241 - 6178299
Alignment:
| Q |
44 |
tttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgc |
102 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
6178241 |
tttgaataagaaaatccaactcctgctggagactctaggaagataatatttgccactgc |
6178299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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