View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_low_4 (Length: 681)
Name: NF13916_low_4
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 4 - 664
Target Start/End: Complemental strand, 16378484 - 16377824
Alignment:
| Q |
4 |
tcactgagtaatccataaagaaagaaggagatgctcattaagaaggtcgaaaacgaaagataaaacggcataaactcaacactcttcgtgcaaatgacca |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16378484 |
tcactgagtaatccataaagaaagaaggagatgctcattaagaaggtcgaaaacgaaagataaaacggcataaactcaacactcttcgtgcgaatgacca |
16378385 |
T |
|
| Q |
104 |
atttctgtgaaattatattgatataaacaagttcaccaagcttgaattcacacaaactagtaaaactcagtattacatggatatctaggaaaatgttaaa |
203 |
Q |
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| T |
16378384 |
atttctgcgaaattatattgatataaacaagttcaccaagcttgaattcacacaaactagtaaaactcagtattacatggatatctaggaaaatgttaaa |
16378285 |
T |
|
| Q |
204 |
cctacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaagcatccaactaaaattcggcgaatagaactatcggttattttca |
303 |
Q |
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| T |
16378284 |
cttacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaagcatccaactaaaattcggcgaatagaactatcggttattttca |
16378185 |
T |
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| Q |
304 |
agctcccgactagtatgatcacaaatatacctaaaactgccagcaataatccaaacattctcacctatcaaaaagaagtatacaataataacacatctta |
403 |
Q |
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| T |
16378184 |
agctcccgactagtatgatcacaaatatacctaaaactgccagcaataatccaaacattctcacctatcaaaaagaagtatacaataataacacatctta |
16378085 |
T |
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| Q |
404 |
gtaacacttcaaaatccatgtgacgaaatttatcataaactttccatatatagtattagaaaaataaccttttttggtttctcagcatagattaagaata |
503 |
Q |
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| T |
16378084 |
gtaacacttcaaaatccatgtgacgaaatttatcataaactttccatatatagtattagaaaaataaccttttttggtttctcagcatagattaagaata |
16377985 |
T |
|
| Q |
504 |
agaaaatgtacacaagctgaaaagctgctccaattgaattaacagtggtaaccaacaaattatcacatgatataagaggagtaccataccacaaacagat |
603 |
Q |
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| T |
16377984 |
agaaaatgtacacaagctgaaaagctgctccaattgaattaacagtggtaaccaacaaattatcacatgatataagaggagtaccataccacaaacagat |
16377885 |
T |
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| Q |
604 |
caaacagtttaatagagaataaatatatggcaatcctgagaacaattctgttgacccattt |
664 |
Q |
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| T |
16377884 |
caaacagtttaatagagaataaatatatggcaatcctgagaacaattctgttgacccattt |
16377824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 509 - 664
Target Start/End: Original strand, 30990765 - 30990920
Alignment:
| Q |
509 |
atgtacacaagctgaaaagctgctccaattgaattaacagtggtaaccaacaaattatcacatgatataagaggagtaccataccacaaacagatcaaac |
608 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| | |||||| |||||||||| || ||||||| |
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| T |
30990765 |
atgtacacaaactgaaacactgctccaattgaattaacagtggtaaccaaaatattatcatgtgatatcaaaggagtgccataccacatgcaaatcaaac |
30990864 |
T |
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| Q |
609 |
agtttaatagagaataaatatatggcaatcctgagaacaattctgttgacccattt |
664 |
Q |
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| T |
30990865 |
agttcatcagggaataaatatatggcaaccctgagaacatttctgtagatccattt |
30990920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 30989923 - 30989976
Alignment:
| Q |
206 |
tacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaa |
259 |
Q |
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||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |
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| T |
30989923 |
tacaattataaacaatggagaagcaaacatagaaatgagagatgcacaactcaa |
30989976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 30989717 - 30989833
Alignment:
| Q |
1 |
tcatcactgagtaatccataaagaaagaaggagatgctcattaagaaggtcgaaaacgaaagataaaacggcataaactcaacactcttcgtgcaaatga |
100 |
Q |
| |
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||||| |||||||| || |||| ||||| ||| ||||||||| ||||| |||| || |||||||| ||||| || ||||||||||| || ||||| |
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| T |
30989717 |
tcatcgctgagtaaaccgtaaactaagaaagaggtgctcattagaaaggtggaaagtgagagataaaaaggcatgaattcaacactctttgtctgaatga |
30989816 |
T |
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| Q |
101 |
ccaatttctgtgaaatt |
117 |
Q |
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|||||||||| |||||| |
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| T |
30989817 |
ccaatttctgcgaaatt |
30989833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 1195543 - 1195596
Alignment:
| Q |
206 |
tacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaa |
259 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||||||| || |||||||| |
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| T |
1195543 |
tacaattataaacaatggagaagcaaacattgaaatgagagatgcgcaactcaa |
1195596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 14207248 - 14207301
Alignment:
| Q |
206 |
tacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaa |
259 |
Q |
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||||||||||||||| ||||| ||||||| |||||||||||| || |||||||| |
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| T |
14207248 |
tacaattataaacaatggagaagcaaacactgaaatgagagatgcgcaactcaa |
14207301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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