View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_low_5 (Length: 602)
Name: NF13916_low_5
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_5 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 8 - 602
Target Start/End: Complemental strand, 19770299 - 19769703
Alignment:
| Q |
8 |
agtgagatgaacatacctacaaaattgattcattgagtttgcccaaagagaataggtatcaggttggagttgctgtcaaggattgaagtagaggcaaagg |
107 |
Q |
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| T |
19770299 |
agtgaaatgaacatacctacaaaattgattcattgagttttcccaaagagaataggtatcaggttggagtttctgtcaaggattgaagtggaggcaaagg |
19770200 |
T |
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| Q |
108 |
gggtgaaaagaatgacaggttagtttagtaaattgcatacgacacaaactcatcccctcgcagatactct--ttcactacggtcgaacaacacctaaaca |
205 |
Q |
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| T |
19770199 |
gggtgaaaagcatgacaggttaggttagtaaattgcatacgacacaaactcatcccctcacatatactctctttcacttcggtcgaacaacacctaaacg |
19770100 |
T |
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| Q |
206 |
aaaaatcaaactacgaaatcaacatttatatgagataattttccaatgtcaaaaccaaacagaattaacaattgaatcaagctcaatttcatagtgaata |
305 |
Q |
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| T |
19770099 |
aacaatcaaactacgaaatcaacatttatatgagataattttccaatgtcaaaaccaaacagaattaacaattgaactaagctcaatttcatagtgaata |
19770000 |
T |
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| Q |
306 |
atctgatatgataagagaagcagatataagcatcacctcaatgtttgaaattgaatcgccaccgtaatggtatctcgaggcatggaagaatccagatgct |
405 |
Q |
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| T |
19769999 |
atctgatatgataagagaagcagatataagcatcacctcaacgtttgaaattgaatcgccaccgtaatgctatctcgaggcatggaagaatccagatgct |
19769900 |
T |
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| Q |
406 |
ccgagattacctcctccattggagaagaacaaaccattgaacaacattacatccacctctacctttctctagctgccttcacacctgtttaaaaaattca |
505 |
Q |
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| T |
19769899 |
ccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatccacctctacctttctctagctgcctccacacctgtttaaaaaattca |
19769800 |
T |
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| Q |
506 |
atggcttgattttccgtatacaccagaaaaataggagcaccaaaaaacatgaattatcaatcatcataaatgcttcaatagaataattgagatcata |
602 |
Q |
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| T |
19769799 |
gtgccttggttttccatatacaccagaaaaataggagcaacaaaaaacatgaattatcaatcatcataaatgcttcaatagaataattgagatcata |
19769703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 4327010 - 4327054
Alignment:
| Q |
50 |
ccaaagagaataggtatcaggttggagttgctgtcaaggattgaa |
94 |
Q |
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| T |
4327010 |
ccaaagagaaaacgtatcgggttggagttgctgtcaaggattgaa |
4327054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 294 - 487
Target Start/End: Complemental strand, 32524306 - 32524113
Alignment:
| Q |
294 |
tcatagtgaataatctgatatgataagagaagcagatataagcatcacctcaatgtttgaaattgaatcgccaccgtaatggtatctcgaggcatggaag |
393 |
Q |
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| T |
32524306 |
tcataatgaataatatgatatcataagagaattagatctaagcatcacctcaacgtttaaaattgaatcgtcgccgtaatgctatctcgaggcatggaag |
32524207 |
T |
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| Q |
394 |
aatccagatgctccgagattacctcctccattggagaagaacaaaccattgaacaacattacatccacctctacctttctctagctgccttcac |
487 |
Q |
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| T |
32524206 |
aatccaaatgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatctacctctacctttctctatctgcattcac |
32524113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 435 - 552
Target Start/End: Original strand, 44711054 - 44711173
Alignment:
| Q |
435 |
caaaccattgaacaacattacatccacctct----acctttctctagctgccttcacacctgtttaaaaaattcaatggcttgattttccgtatacacca |
530 |
Q |
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| T |
44711054 |
caaaccatagaataaaattacatccacctctgcgtacctttctctagctgccttcac--ctgtttaaaaaactcagttccttgattttccatatacacca |
44711151 |
T |
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| Q |
531 |
gaaaaataggagcaccaaaaaa |
552 |
Q |
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| T |
44711152 |
gaaaaataggaacacaaaaaaa |
44711173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 18931338 - 18931434
Alignment:
| Q |
160 |
tcccctcgcagatactct--ttcactacggtcgaacaacacctaaacaaaaaatcaaactacgaaatcaacatttatatgagataattttccaatgt |
254 |
Q |
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| T |
18931338 |
tcccctcgccgatactctctttcacttaagtcaaacaacaacaaaacaaagaatcaaactacaaaatcaaaattgatatcagataattttccaatgt |
18931434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 602
Target Start/End: Complemental strand, 44162445 - 44162350
Alignment:
| Q |
510 |
cttgattttccgtatacaccagaaaaataggagcaccaaaaaa--catgaattatcaatcatcataaa--tgcttcaatagaataattgagatcata |
602 |
Q |
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| T |
44162445 |
cttggttttccatatacaccataaaa-taggagcacaaaaaaaaacacgaattgtcaatcatcatatacatgcttcaatagaatacttgagatcata |
44162350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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