View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_low_6 (Length: 488)
Name: NF13916_low_6
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 30855756 - 30855319
Alignment:
| Q |
17 |
aaaaagaaggctattttaactatatatgtgatcatacttggaagcgcatacaaagttaggtcaagtaaacatttatcaaaagtggacaaagatgtacata |
116 |
Q |
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| T |
30855756 |
aaaaagaaggctattttaactatatatgtgatcgtacttggaagcgcatataaagttaggtcaagtaaacatttatcaaaagcggacatagatgtacata |
30855657 |
T |
|
| Q |
117 |
ttaaataatttcctcaatcaattctaatgtattgtatgagttcttttcttatagtgtctaatttaggagat-----tcaatgtatgttaaattctttgcg |
211 |
Q |
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| T |
30855656 |
ttaaataatttcctcaatcaattctaatgtattgcatgagttcttttcttatagcgtctaattttggagatgaaattcaatatatgttaaattctttgcg |
30855557 |
T |
|
| Q |
212 |
gtggggttcgaatagaaacaaagaaagaggtgtcaactagttaagatgagatatattaaccatgaggatgaaacatggaggaatgagtttttatcatctc |
311 |
Q |
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| T |
30855556 |
gtggggttcgaatagaatcaaaggaagaggtatcaactagttaagatgagatatattaaccacgaggatgaaacatggaggaatgagtttttatcatctc |
30855457 |
T |
|
| Q |
312 |
tatggttttaaattggatattcttgagaatcaatgtttggatttatccatcaaccatgataaaaaatttcaaagctacatattatccaacatgagannnn |
411 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
30855456 |
tatggttttaacttggatattcttgagaatcaatgtttggatttatccatcaaccatgatcagaattttcaaagctacatattatccaacatgaga-att |
30855358 |
T |
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| Q |
412 |
nnnnggtgccaaattaggccataatctaagttttatatg |
450 |
Q |
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| T |
30855357 |
ttttggtgccaaattaggccataatctaagttttatatg |
30855319 |
T |
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