View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13916_low_7 (Length: 484)
Name: NF13916_low_7
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13916_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 52082245 - 52081754
Alignment:
| Q |
1 |
tttcatgacatatattaaaggaagaattgtagtttggttgatgattatttt-ttgctaacattttacaaggtaatc---------------gcacattct |
84 |
Q |
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| T |
52082245 |
tttcatgacatatattaaagaaagaaatgtagtttggttgatgattattttattgctaacattt-acaaggtaatctccaagaacaatatcgcacattct |
52082147 |
T |
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| Q |
85 |
gggtatggtgattattattgattgattagaagtaaaggaaactcatcatgacatatatctttgaccattaagtatcttgtttgtggagatagcattcatg |
184 |
Q |
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| T |
52082146 |
gggtatggtgattattattgattgattagaagtaaaggaaactcatcatgacatatatctttgaccattaagtatcttgtttgtggagatagcattcatg |
52082047 |
T |
|
| Q |
185 |
tgataaaaatagttgcaagctgtgtgtatcattgtttatgctttaatttgtttgtgttccaaaggatggaagtgtaaaaggtacattttgtcggtttctt |
284 |
Q |
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| T |
52082046 |
tgataaaaatagttccaagctgtgtgtatcattgtttatgcttg----tttatgtgttccaaaggatggaagtgtaaaaggtacattttgtcggtttctt |
52081951 |
T |
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| Q |
285 |
ttgcattttctttgagctcaaccttttgtaatcatcaacctcaatatagtttccattttgtctgaatgaattttttgcaacaaaaattataagacatttg |
384 |
Q |
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| T |
52081950 |
ttgcattttctttgagctcaaccttttgtaatcatcaacctcaatatagttcccattttgtctgaatgaattttttgcaacaaaaattataagacatttg |
52081851 |
T |
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| Q |
385 |
cataattaaaaaggcacagctttattgattcgtttaatgcaccaaaagctttaagaccggctcttttttaataccattgtttttccaaatcagttat |
481 |
Q |
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| T |
52081850 |
cataattaaaaaggcacagctttattgattcgtttaatgcaccaaaagccttaagatcggctcttttttaataccattgtttttccaaatcagttat |
52081754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 290
Target Start/End: Complemental strand, 52092304 - 52092155
Alignment:
| Q |
149 |
ccattaagtatcttgtttgtggagatagcattcatgtgataaaaatagttgcaag--ctgtgtgtatcattgtttatgctt---taatt--tgtt-tgtg |
240 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||||| ||| || | |||| |||| |
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| T |
52092304 |
ccattaagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaggttgtgtgtgtatctttgtttatacttgtctatgtgctgttatgtg |
52092205 |
T |
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| Q |
241 |
ttccaaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcat |
290 |
Q |
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| T |
52092204 |
ttccaaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcat |
52092155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 52092350 - 52092305
Alignment:
| Q |
81 |
ttctgggtatggtgattattattgattgattagaagtaaaggaaac |
126 |
Q |
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| T |
52092350 |
ttctggttttggtgattattattgattgattagaagtaaaggaaac |
52092305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 52092440 - 52092382
Alignment:
| Q |
1 |
tttcatgacatatattaaaggaagaattgtagtttggttgatgattattttttgctaacattt |
63 |
Q |
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| T |
52092440 |
tttcatgacatatattaaag----aattgtagtttggttgatgatgatttttttctaacattt |
52092382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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