View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13916_low_8 (Length: 458)

Name: NF13916_low_8
Description: NF13916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13916_low_8
NF13916_low_8
[»] chr3 (6 HSPs)
chr3 (98-447)||(43614627-43614976)
chr3 (151-443)||(43609320-43609612)
chr3 (280-441)||(43602887-43603050)
chr3 (1-65)||(43615009-43615073)
chr3 (151-234)||(43603120-43603203)
chr3 (6-55)||(42914679-42914728)
[»] chr2 (2 HSPs)
chr2 (3-64)||(32532584-32532645)
chr2 (4-53)||(12287802-12287851)
[»] chr8 (3 HSPs)
chr8 (2-54)||(3499376-3499428)
chr8 (5-54)||(4490536-4490585)
chr8 (6-54)||(19722754-19722802)
[»] chr7 (1 HSPs)
chr7 (7-53)||(23705216-23705262)
[»] chr5 (1 HSPs)
chr5 (2-55)||(10721274-10721327)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 98 - 447
Target Start/End: Complemental strand, 43614976 - 43614627
Alignment:
Q  98 ctctatgtaccaacaaaataaagattagagaataattaaaataatgtactacgtaccccaataatgaaagcataaaaatcttgaagatggtcataaatga 197  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43614976 ctctatgtaccgacaaaataaagattagagaataattaaaataatgtactacgtaccccaataatgaaagcataaaaatcttgaagatggttataaatga 43614877  T
Q  198 gaatattactggcacggcttgtttcctggaccatataataaagtattatgtcagggaaaaatcaagtaaaactataggaaagaaaaacagaacatattta 297  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43614876 gaatattgctggcacggcttgtttcctggaccatataataaagtattatgtcagggaaaaatcaagtaaaactataggaaagaaaaacagaacatattta 43614777  T
Q  298 tcaacattaccgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacacagatgttttcattcctccgtta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43614776 tcaacattaccgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacacagatgttttcattcctccgtta 43614677  T
Q  398 aacgcggccttggacagcaaagtcatcccagaatatattaattgtagtat 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43614676 aacgcggccttggacagcaaagtcatcccagaatatattaattgtagtat 43614627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 151 - 443
Target Start/End: Complemental strand, 43609612 - 43609320
Alignment:
Q  151 taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatattactggcacggcttgtttcctggaccatataataaagtattatgtca 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |    
T  43609612 taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatgttactggcacggcttgtttcctggaccatataataaagtattacgtta 43609513  T
Q  251 gggaaaaatcaagtaaaa-ctataggaaagaaaaacagaacatatttatcaacattaccgttcaaatatcaaaaataaagggaccatgataatggctcca 349  Q
    | ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||  |||||||||||||||||||||||||    
T  43609512 gagaaaa-tcaagtaaaaactataggaaagaaaaacagaacatatttttcaacattacctttcaaatattaaagctaaagggaccatgataatggctcca 43609414  T
Q  350 atcagctgtctataaaaaacaaacacagatgttttcattcctccgttaaacgcggccttggacagcaaagtcatcccagaatatattaattgta 443  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||| | |||||||||||||||||||||||||||||    
T  43609413 atcagttgtctataaaaaacaaacacatatgttttcattcctccgttaaacacagctttggataacaaagtcatcccagaatatattaattgta 43609320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 441
Target Start/End: Complemental strand, 43603050 - 43602887
Alignment:
Q  280 aaaaacagaacatatttatcaacatt---accgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacaca 376  Q
    ||||||||| ||||||| ||||||||   |||||||||||||||||   ||||||||||| || |||||||||||||| ||||| || || |||||||||    
T  43603050 aaaaacagatcatattt-tcaacattgttaccgttcaaatatcaaagccaaagggaccataatcatggctccaatcagttgtctgtagaagacaaacaca 43602952  T
Q  377 gatgttttcattcctccgttaaacgcggccttggacagcaaagtcatcccagaatatattaattg 441  Q
    || |||||||||||| |||||||| |||||||||||| ||| |||||||| | ||||||||||||    
T  43602951 gaggttttcattccttcgttaaacacggccttggacatcaaggtcatcccggcatatattaattg 43602887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43615073 - 43615009
Alignment:
Q  1 ccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatctaa 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615073 ccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatctaa 43615009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 43603203 - 43603120
Alignment:
Q  151 taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatattactggcacggcttgtttcctggaccatata 234  Q
    ||||| |||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||    
T  43603203 tacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccatata 43603120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 42914679 - 42914728
Alignment:
Q  6 cttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggc 55  Q
    |||||||| ||| |||||||||||| | ||||||||||||||||||||||    
T  42914679 cttggaagctttacttctcgctgatacatctagagtgcagttcttaaggc 42914728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 32532645 - 32532584
Alignment:
Q  3 gggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtaatcta 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32532645 gggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggcagtagtcta 32532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 12287851 - 12287802
Alignment:
Q  4 ggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaag 53  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  12287851 ggcttggaagatttactcctcgctgatgcttctagagtgcagttcttaag 12287802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 3499376 - 3499428
Alignment:
Q  2 cgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg 54  Q
    ||||||||||||| || ||||||||||||| || |||||||||||||||||||    
T  3499376 cgggcttggaagagttacttctcgctgatgtgtttagagtgcagttcttaagg 3499428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 4490585 - 4490536
Alignment:
Q  5 gcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg 54  Q
    ||||||||||||| ||| | | |||||| |||||||||||||||||||||    
T  4490585 gcttggaagatttacttattgttgatgcttctagagtgcagttcttaagg 4490536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 19722754 - 19722802
Alignment:
Q  6 cttggaagattttcttctcgctgatgcgtctagagtgcagttcttaagg 54  Q
    |||||||||||| || || | |||||| |||||||||||||||||||||    
T  19722754 cttggaagatttactccttgatgatgcttctagagtgcagttcttaagg 19722802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 23705262 - 23705216
Alignment:
Q  7 ttggaagattttcttctcgctgatgcgtctagagtgcagttcttaag 53  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  23705262 ttggaagatttacttcttgctgatgcgtctagagtgtagttcttaag 23705216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 10721327 - 10721274
Alignment:
Q  2 cgggcttggaagattttcttctcgctgatgcgtctagagtgcagttcttaaggc 55  Q
    |||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||    
T  10721327 cgggtttggaagatttacttcttgctgatgcttctagagtacagttcttaaggc 10721274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University