View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13917_high_1 (Length: 652)
Name: NF13917_high_1
Description: NF13917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13917_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 25577645 - 25577959
Alignment:
| Q |
1 |
aaatcaacattcttttatccctgtttgccaattttctatattttttattgaaaaataaaagtttaggtgagttgtgtcttggtctgaaagccatttacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
25577645 |
aaatcaacattcttttatccctgtttgccaattttctatattttttattgaaaaataaaagtttaggtgagttgtgtctcggtctgaaagccatttaata |
25577744 |
T |
|
| Q |
101 |
aatatgttatagttaaactatccgtcaaaagggaaggttacacaacgaacatccctcaaaagggagttagagataaaagcaggaattaaattaaaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25577745 |
aatatgttatagttaaactatccgccaaaagggaaggttacacaacgaacatccctcaaaagggagttagagataaaagcaggaattaaattaaaaattc |
25577844 |
T |
|
| Q |
201 |
cacaaggaacatatgaagaaaaccccgacttggctacactatccgccacaagattgacctctatctcaaaatataagtgattttgacataatcataaccg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||| |
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|
| T |
25577845 |
cacaaggaacatatgaagaaaaccccgacttggctacactatccgccacaaggttgacctctctctcaaaacataagtgatttggacataatcataaccg |
25577944 |
T |
|
| Q |
301 |
ataccgaaagcaatg |
315 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
25577945 |
attctgaaagcaatg |
25577959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 316 - 644
Target Start/End: Original strand, 25578116 - 25578460
Alignment:
| Q |
316 |
agtgttaaagagagtatcccaaacattactcatagagcaattaactccgaaccatacccacccctagtaagcataatttcaaacaaaggtttcaaccgac |
415 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25578116 |
agtgttaaagagagtatctcaaacattgctcatagagcagataactccgaaccatacccacccctagtaagcataatttcaaaccaaggtttcaaccgac |
25578215 |
T |
|
| Q |
416 |
ggtaattaatttcttttcttattttaacaaagagaagaaaataacgtaattaattgttgtttgttgggtcnnnnnnnnnnctttctttcttccaggtgct |
515 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25578216 |
ggtaattaatttcttttctttttttaacaaacagaagaaaataacgtaattaattgttgtttgttgggt-ttttttttttctttctttcttccaggtgcg |
25578314 |
T |
|
| Q |
516 |
ataatagta-----------------ttatctacccacgcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctatgttatct |
598 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25578315 |
ataatagtatagagcaattaattgtcttatctttgctagcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctttgttatcg |
25578414 |
T |
|
| Q |
599 |
ttcaatttcaaacaatctcttccacttcagtcttctccttcttctc |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25578415 |
ttcaatttcaaacaatctcttccacttcagtcttcttcttcttctc |
25578460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 135 - 315
Target Start/End: Original strand, 26136106 - 26136286
Alignment:
| Q |
135 |
aggttacacaacgaacatccctcaaaagggagttagagataaaagcaggaattaaattaaaaattccacaaggaacatatgaagaaaaccccgacttggc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
26136106 |
aggttacacaacgaacatccctcaaaagggagttagagataaaagcaggaattaaattaaaaattccacaagtaacatatgaagaaaaccccgacttggc |
26136205 |
T |
|
| Q |
235 |
tacactatccgccacaagattgacctctatctcaaaatataagtgattttgacataatcataaccgataccgaaagcaatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26136206 |
tacactatccgccacaagattgacctctatctcaaaacataagtgattttgacataatcataaccgataccgaaagcaatg |
26136286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 312 - 485
Target Start/End: Original strand, 26136420 - 26136593
Alignment:
| Q |
312 |
aatgagtgttaaagagagtatcccaaacattactcatagagcaattaactccgaaccatacccacccctagtaagcataatttcaaacaaaggtttcaac |
411 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
26136420 |
aatgaatgttaaagagagtatcccaagcattactcataaaacaattaactccgaaccatacccatccctagtaagcataatttcaaaccaaggtttcaac |
26136519 |
T |
|
| Q |
412 |
cgacggtaattaatttcttttcttattttaacaaagagaagaaaataacgtaattaattgttgtttgttgggtc |
485 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26136520 |
cgacggtaattaatttcttttttttttttaacaaagagaagaaaataacgtaattaattgttgtttgttgggtc |
26136593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 26128784 - 26128923
Alignment:
| Q |
1 |
aaatcaacattcttttatccctgtttgccaattttctatattttttattgaaaaataaaagtttaggtgagttgtgtcttggtctgaaagccatttacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
26128784 |
aaatcaacattcttttatccctgtttgccaattttctatattttttattgaaaaataaaagtttaggtgagttgtgtctcggtctgaaagccatttacta |
26128883 |
T |
|
| Q |
101 |
aatatgttatagttaaactatccgtcaaaagggaaggtta |
140 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26128884 |
aatatgttatagttaaactatccgccaaaagggaaggtta |
26128923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 537 - 644
Target Start/End: Original strand, 26136660 - 26136767
Alignment:
| Q |
537 |
gcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctatgttatctttcaatttcaaacaatctcttccacttcagtcttctcc |
636 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
26136660 |
gcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctatgttatctttcaatttcaaacaatctcttccacttcagtcttcttc |
26136759 |
T |
|
| Q |
637 |
ttcttctc |
644 |
Q |
| |
|
|||||||| |
|
|
| T |
26136760 |
ttcttctc |
26136767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 33852148 - 33852460
Alignment:
| Q |
1 |
aaatcaacattcttttatccctgtttgccaattttctatatttt-ttattgaaaaataaaagtttaggtgagttgtgtcttggtctgaaagccatttact |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
33852148 |
aaatcaacattcttttatccctgtttgccaattttctatatttttttattgaaaaataaaagtttaggtgagttgggtctcggtctggaagccatttact |
33852247 |
T |
|
| Q |
100 |
aaatatgttatagttaaactatccgtcaaaagggaaggttacacaacgaacatccctcaaaagggagttagagataaaagcaggaattaaattaaaaatt |
199 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33852248 |
aattgtgttatagttaaactatccgccaaaagggaaggttacacaacaaacatcccacaaaagggagttagagataaaagcaggaatcaaattaaaaatt |
33852347 |
T |
|
| Q |
200 |
ccacaaggaacatatgaagaaaaccccgacttggctacactatccgccacaagattgacctctatctcaaaatataagtgattttgacataatcataacc |
299 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
33852348 |
ccacgaggaacatccgaagaaaaccccgaccaggctacactatccg-cacaaggttgacctctctctcaaaacataagtgattttgacataatcataa-- |
33852444 |
T |
|
| Q |
300 |
gataccgaaagcaatg |
315 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
33852445 |
gatactgaaagcaatg |
33852460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 312 - 634
Target Start/End: Original strand, 33852605 - 33852940
Alignment:
| Q |
312 |
aatgagtgttaaagagagtatcccaaacattactcatagagcaattaactccgaaccatacccacccctagtaagcataatttcaaacaaaggtttcaac |
411 |
Q |
| |
|
||||||||||||||||| | || ||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
33852605 |
aatgagtgttaaagagaatgtctcaaacattagtcatagaacaattaaccccgaaccatacccacccctaataagcataattccaaactaaggtttcaac |
33852704 |
T |
|
| Q |
412 |
cgacggtaattaatttcttttcttattttaacaaagagaagaaaataacgtaattaattgttgtttgttgggtc-nnnnnnnnnnctttctttcttccag |
510 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
33852705 |
ctacgataattaatttcttttctttttttaacaaagagaagaaaataatgtaattaattgttgtttgttgagtctttttttttttctttttttcttccag |
33852804 |
T |
|
| Q |
511 |
gtgctataatagta-------------ttatctacccacgcttcaaaactccacaagtaataagggtaaataagtaattacatagtaaccctatgttatc |
597 |
Q |
| |
|
|||||||||||||| |||||| | ||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
33852805 |
gtgctataatagtatagagcaattgtcttatctttgctagcttc-agactccacaagtaataagggtaaataagtaattacttagtaaccctttgttatc |
33852903 |
T |
|
| Q |
598 |
tttcaatttcaaacaatctcttccacttcagtcttct |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33852904 |
tttcaatttcaaacaatctcttccacttcagtcttct |
33852940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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