View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13917_high_2 (Length: 479)

Name: NF13917_high_2
Description: NF13917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13917_high_2
NF13917_high_2
[»] chr1 (24 HSPs)
chr1 (1-471)||(13064787-13065259)
chr1 (8-272)||(30367883-30368147)
chr1 (8-263)||(13086260-13086518)
chr1 (8-269)||(13101153-13101414)
chr1 (159-263)||(13244302-13244406)
chr1 (166-269)||(13007511-13007614)
chr1 (166-269)||(13069954-13070057)
chr1 (9-263)||(13271740-13271997)
chr1 (9-119)||(13094553-13094663)
chr1 (159-263)||(12963692-12963796)
chr1 (8-249)||(13204612-13204853)
chr1 (166-269)||(19727464-19727567)
chr1 (9-119)||(13129982-13130092)
chr1 (1-260)||(19278952-19279214)
chr1 (8-119)||(13161674-13161785)
chr1 (1-129)||(13080783-13080911)
chr1 (8-119)||(13007353-13007464)
chr1 (8-119)||(13070104-13070215)
chr1 (168-269)||(13214132-13214233)
chr1 (19-119)||(19727317-19727417)
chr1 (1-119)||(12963803-12963921)
chr1 (163-263)||(13094707-13094807)
chr1 (163-263)||(13130136-13130236)
chr1 (159-263)||(13161825-13161929)
[»] chr6 (1 HSPs)
chr6 (161-272)||(31396450-31396562)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 13065259 - 13064787
Alignment:
Q  1 acatggactccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13065259 acatggactccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtgga 13065160  T
Q  101 ggtaaactagtttatcaagtttttccacaattgaagtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccac 200  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13065159 ggtaaattagtttatcaagcttttccacaattgaagtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccac 13065060  T
Q  201 aacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcccgctaacaatagattgactgcagtgtccctatgctac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||    
T  13065059 aacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccgtttcccgctaacaatagattgactgcagtgtctctaagatac 13064960  T
Q  301 t--ccactcattttcccttttcccgctcctttcagaatgtcttttatcaagtcacaatcggaatcctccacttctctgctgctccacaatcggttttgct 398  Q
    |   ||||| ||||||||||||||| ||||||||| || ||||||||||||||||| |||||||| |||||||||||  |||| |  |||| ||||||||    
T  13064959 ttctcactcgttttcccttttcccgttcctttcagtatctcttttatcaagtcacagtcggaatcttccacttctctagtgctgctgaatctgttttgct 13064860  T
Q  399 cttcaagtttggatagtatgcattcatgcaagaatttgtcaagactctcttgagctactttgagtttcttctc 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13064859 cttcaagtttggatagtatgcattcatgcaagaatttgtcaagactttcttgagctactttgagtttcttctc 13064787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 30368147 - 30367883
Alignment:
Q  8 ctccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaac 107  Q
    |||||||||| |||||||||| ||||||||||    |  |||| | |||||||| |||||| | ||| | || ||||||||||||||| |||||||| ||    
T  30368147 ctccactaggtagtatatcagatttgattgcactgataagctcaaaaggtacagtaggatacaacctcatggattcacatatagctccatggaggtagac 30368048  T
Q  108 tagtttatcaagtttttccacaattgaagtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaacagga 207  Q
    ||| ||||||||  ||||||| |||||||| ||| | || ||||  |  |||| |||||||||||| |||||||||||||| ||||||||||||| ||||    
T  30368047 tagcttatcaaggctttccaccattgaagttatccaattctcatgttttgatacacaattatctttgatctcttgaataattttggcttccacaatagga 30367948  T
Q  208 tgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcccgctaacaa 272  Q
    |||  |||||||||||| || ||||||||||||| |||||||| ||||||||| || ||||||||    
T  30367947 tgagttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccattacctgctaacaa 30367883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 13086260 - 13086518
Alignment:
Q  8 ctccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaac 107  Q
    |||||||||| ||||||||||||||||||||| |||| ||||  |  |||||||||||||||||||| || ||||||||||||||||| || ||||| ||    
T  13086260 ctccactaggtagtatatcagctttgattgcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacac 13086359  T
Q  108 tagtttatcaagtttttccacaattga---agtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaaca 204  Q
    |||||||| ||| ||||| ||  || |   ||| | ||| || || ||||  ||||||||||||||||| ||||||||||| || || |||||||| |      
T  13086360 tagtttattaagcttttcaactcttaaattagtgaccaaattatcctcatgtgatagacaattatcttttatctcttgaattattttagcttccactatg 13086459  T
Q  205 ggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcc 263  Q
      ||||  ||||||||||||| |||||||||| ||||||||||||||||| ||| ||||    
T  13086460 aaatgagttgaaacaagccaagagaaccaacttagacctgaactaactgttccacttcc 13086518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 13101153 - 13101414
Alignment:
Q  8 ctccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaac 107  Q
    ||||||||||||||||||| | |||||||| | |  | ||||| | ||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||    
T  13101153 ctccactaggaagtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcacatatagctccatggaggtacac 13101252  T
Q  108 tagtttatcaagtttttccacaattgaagtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaacagga 207  Q
    ||| |||||||| |  ||  |  | |||| ||||   || || || |  |   |||| |||||||| || |||||||| || ||||||||||||| ||||    
T  13101253 tagcttatcaagatactcatctctcgaaggaatctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaatagga 13101352  T
Q  208 tgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcccgctaa 269  Q
    |||   ||||||||||| || |||||||||||| |||||||||||| ||||||||| |||||    
T  13101353 tgagtggaaacaagccagaaaaaccaactgagagctgaactaactgggccatttcctgctaa 13101414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 13244406 - 13244302
Alignment:
Q  159 tagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgcca 258  Q
    ||||||||||||||| |||||||||||||| || |||||| ||| |||||||  |||||||||||||||||||||||| ||||||||||||| ||| |||    
T  13244406 tagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttcca 13244307  T
Q  259 tttcc 263  Q
    |||||    
T  13244306 tttcc 13244302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 13007511 - 13007614
Alignment:
Q  166 ttatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcccg 265  Q
    |||||||| || ||||||||||| ||||||||||||| |||||||  |||||||||||| || |||||||||||||||||||||| |||||||||||| |    
T  13007511 ttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaactaattgtgccatttcctg 13007610  T
Q  266 ctaa 269  Q
    ||||    
T  13007611 ctaa 13007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 13070057 - 13069954
Alignment:
Q  166 ttatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcccg 265  Q
    |||||||| || ||||||||||| ||||||||||||| |||||||  |||||||||||| || |||||||||||||||||| |||||||||||||||| |    
T  13070057 ttatcttttatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaagtaactgtgccatttcctg 13069958  T
Q  266 ctaa 269  Q
    ||||    
T  13069957 ctaa 13069954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 13271740 - 13271997
Alignment:
Q  9 tccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaact 108  Q
    ||||||||| ||||||||||  || | |||| |||| || || |  |||| |||||||||||| || |||| ||||||||||||| | || |||||||      
T  13271740 tccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatc 13271839  T
Q  109 agtttatcaagtttttccacaattgaagta---atcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaacag 205  Q
    || |||||||  ||||| ||| || || ||   ||||| || || || |  | |||||||| |||||| |||||||||||||  || |||||||||  ||    
T  13271840 agcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattag 13271939  T
Q  206 gatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcc 263  Q
    |||||  |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  13271940 gatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccatttcc 13271997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 13094553 - 13094663
Alignment:
Q  9 tccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaact 108  Q
    ||||||||| |||||||||| |||||||||| |  | ||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||    
T  13094553 tccactaggtagtatatcagatttgattgcacagatatgctcaaaaggtacaggaggataaagccttaaggtttcacatatagctccatggaggtatact 13094652  T
Q  109 agtttatcaag 119  Q
    || ||||||||    
T  13094653 agcttatcaag 13094663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 12963796 - 12963692
Alignment:
Q  159 tagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgcca 258  Q
    |||| |||||||||| |||||||||||||| || | |||||||| |||||||  |||||||||||||||||||||||| ||||||||||||||||| |||    
T  12963796 tagaaaattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttcca 12963697  T
Q  259 tttcc 263  Q
     ||||    
T  12963696 cttcc 12963692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 13204612 - 13204853
Alignment:
Q  8 ctccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaac 107  Q
    |||||||||| |||||||| | |||||||||| |  | ||||| | |||||||||||||||||| || |||||||||||||||||||| || ||||| ||    
T  13204612 ctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatgaaggtacac 13204711  T
Q  108 tagtttatcaagtttttccacaattgaagtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaacagga 207  Q
    ||| |||||||| |  ||  |  | |||| ||||   || || || |  |   |||| |||||||| || |||||||| || ||||||||||||| ||||    
T  13204712 tagcttatcaagatactcatctctcgaaggaatctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaatagga 13204811  T
Q  208 tgacatgaaacaagccaaaagaaccaactgagacctgaacta 249  Q
    |||   |||||||||||||| |||||||| ||||||||||||    
T  13204812 tgagtggaaacaagccaaaaaaaccaacttagacctgaacta 13204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 19727464 - 19727567
Alignment:
Q  166 ttatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcccg 265  Q
    |||||||| || ||||||||||| |||||||| |||| |||||||   |||||||||||||| |||||||||||||||| |||||||| ||||||||| |    
T  19727464 ttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacctgtactaactgggccatttcctg 19727563  T
Q  266 ctaa 269  Q
    ||||    
T  19727564 ctaa 19727567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 13129982 - 13130092
Alignment:
Q  9 tccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaact 108  Q
    ||||||||| |||||||||| |||||||| | |  | ||||| | ||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||    
T  13129982 tccactaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatact 13130081  T
Q  109 agtttatcaag 119  Q
    || ||||||||    
T  13130082 agcttatcaag 13130092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 19279214 - 19278952
Alignment:
Q  1 acatggactccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtgga 100  Q
    |||||| |||||||||| |||||||| |  || | |||| |||| || || |  |||||||| |||||||||||||||||||||||||||||||| || |    
T  19279214 acatggtctccactaggtagtatatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaa 19279115  T
Q  101 ggtaaactagtttatcaagtttttccacaattgaa---gtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttc 197  Q
    | |||||||| |||||||| | || |||| |  ||   || ||||| || || || |  | || ||| ||| | || |||||||||||||| || |||||    
T  19279114 gataaactagcttatcaagctctttcacactaaaatttgtgatcaaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttc 19279015  T
Q  198 cacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatt 260  Q
     |||| |||||||  ||| || ||||||||||||||| ||||||| ||||||| ||| |||||    
T  19279014 gacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccatt 19278952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 13161674 - 13161785
Alignment:
Q  8 ctccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaac 107  Q
    |||||||||| |||||||| | |||||||||| |  | ||||| | ||||| ||| |||||||||||||||| ||||||||||||||| |||||||| ||    
T  13161674 ctccactaggtagtatatcggatttgattgcacagatatgctcaaaaggtataggtggataaagccttaaggtttcacatatagctccatggaggtatac 13161773  T
Q  108 tagtttatcaag 119  Q
    ||| ||||||||    
T  13161774 tagcttatcaag 13161785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13080911 - 13080783
Alignment:
Q  1 acatggactccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtgga 100  Q
    |||||| |||||||||||||| |||| | |||||| ||| |||| ||||  |  | ||||| |||||| |||||||||||||||||||| ||||| || |    
T  13080911 acatggtctccactaggaagtttatccgatttgatagcacacttgtgctgaaatgctacagaaggatatagccttaaggcttcacatatggctccatgaa 13080812  T
Q  101 ggtaaactagtttatcaagtttttccaca 129  Q
    |||||||||| |||||||| | |||||||    
T  13080811 ggtaaactagcttatcaagctcttccaca 13080783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 13007353 - 13007464
Alignment:
Q  8 ctccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaac 107  Q
    |||||||||| |||||||| |  ||||||||| |  | ||||| | ||||||||||||||||||||| | ||||||||||| |||||| |||||||| ||    
T  13007353 ctccactaggtagtatatcggaattgattgcacagatatgctcaaaaggtacaggaggataaagcctcatggcttcacatagagctccatggaggtacac 13007452  T
Q  108 tagtttatcaag 119  Q
    ||| ||||||||    
T  13007453 tagcttatcaag 13007464  T

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Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 13070215 - 13070104
Alignment:
Q  8 ctccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaac 107  Q
    |||||||||| |||||||| | |||||||||| |  | ||||| | |||||||||||||||||| || |||| ||||||||||||||| || ||||| ||    
T  13070215 ctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcacatatagctccatgaaggtacac 13070116  T
Q  108 tagtttatcaag 119  Q
    ||| ||||||||    
T  13070115 tagattatcaag 13070104  T

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Target: chr1; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 13214132 - 13214233
Alignment:
Q  168 atctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttcccgct 267  Q
    |||||| || ||||||||||| || |||||||||| | |||||  |||||||||||| || |||||| |||||||||||| ||||| ||||||||| |||    
T  13214132 atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgct 13214231  T
Q  268 aa 269  Q
    ||    
T  13214232 aa 13214233  T

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Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 19727317 - 19727417
Alignment:
Q  19 agtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaactagtttatcaa 118  Q
    ||||||| || |||||||||| |  | ||||| | |||||||||||||||||| || ||||||| ||||| | ||||||||||||| ||||| |||||||    
T  19727317 agtatatgagatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttaacatagatctccgtggaggtacactagcttatcaa 19727416  T
Q  119 g 119  Q
    |    
T  19727417 g 19727417  T

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Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 12963921 - 12963803
Alignment:
Q  1 acatggactccactaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtgga 100  Q
    |||||| |||||||||| | |||||| | ||| |||||| |||| || || |  |||| |||||||||||||||||| |||||||| |||||||| || |    
T  12963921 acatggtctccactaggtaatatatctgatttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaa 12963822  T
Q  101 ggtaaactagtttatcaag 119  Q
    | ||||| || ||||||||    
T  12963821 gataaacaagcttatcaag 12963803  T

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Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 13094707 - 13094807
Alignment:
Q  163 caattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttc 262  Q
    ||||||||| | ||||||||||| || ||  ||||||||| ||||| |  ||||| |||||| || |||||||||||| ||||||||| ||| |||||||    
T  13094707 caattatctctgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttc 13094806  T
Q  263 c 263  Q
    |    
T  13094807 c 13094807  T

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Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 13130136 - 13130236
Alignment:
Q  163 caattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccatttc 262  Q
    ||||||||||| ||||||||||| || ||  ||||||||| ||||| |  ||||| |||||| || |||||||||||| ||||||||| ||  |||||||    
T  13130136 caattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgaaccatttc 13130235  T
Q  263 c 263  Q
    |    
T  13130236 c 13130236  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 13161825 - 13161929
Alignment:
Q  159 tagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgcca 258  Q
    ||| ||||||||||| ||||||||||| || ||  ||||||||| ||||| |  |||||  ||||| || |||||||||||| ||||||||| ||  |||    
T  13161825 tagccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaacca 13161924  T
Q  259 tttcc 263  Q
    |||||    
T  13161925 tttcc 13161929  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 31396562 - 31396450
Alignment:
Q  161 gacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaa-caagccaaaagaaccaactgagacctgaactaactgtgccat 259  Q
    |||| |||||||  |||||||||||||| ||||||||||||  |||||||  ||||| ||||||| || ||||||| ||||| |||||||| ||||||||    
T  31396562 gacagttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccat 31396463  T
Q  260 ttcccgctaacaa 272  Q
    |||| ||||||||    
T  31396462 ttcctgctaacaa 31396450  T

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