View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13917_high_5 (Length: 333)
Name: NF13917_high_5
Description: NF13917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13917_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 187 - 318
Target Start/End: Original strand, 10363778 - 10363909
Alignment:
| Q |
187 |
acttgtgcagtgctataatttcaaacaaaatattaattcttattttatttgttgtcggtatacactcacatgcatctaatgtcatgaaatgacttcaact |
286 |
Q |
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| T |
10363778 |
acttgtgcggtgctaaaatttcaaacaaaatagtaattcttattttatttgttgtcggtatgcactcgcacgcatctaatgtcatgaaatgacttcaact |
10363877 |
T |
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| Q |
287 |
tcaacattaaacttgttatgaatgtgttaatt |
318 |
Q |
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| T |
10363878 |
tcaatattaaacttgttatgaatgtgttaatt |
10363909 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 10361646 - 10361741
Alignment:
| Q |
158 |
gagtattattaccgtttgagactattaaaacttgtgcagtgctataatttcaaacaaaatattaattcttattttatttgttgtcggtatacactcaca |
256 |
Q |
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| T |
10361646 |
gagtattattaccgtttgagacta---aaacttgtgtggttctataatttcaaacaaaatattagttcttaatttatttgttctaggtatgcacccaca |
10361741 |
T |
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