View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13917_high_7 (Length: 322)
Name: NF13917_high_7
Description: NF13917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13917_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 36527503 - 36527195
Alignment:
| Q |
1 |
acataattcgcaccaataacaagaataaccatgcttcaagtggctcaagaaaacaatacaaatgacacttcattgtctcgcatcttcacatgatcatatc |
100 |
Q |
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| T |
36527503 |
acataattcgcaccaataacaagaataaccatgcttcaagtggctcaagaaaacaatacaaatgacacttcattgtctggcatcttcacatgatcatatc |
36527404 |
T |
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| Q |
101 |
aaaacagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcatttccacaaaagcatacattgaaaacaataatcaaaccagc |
200 |
Q |
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| T |
36527403 |
aaaacagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcatttccacaaaagcatacattgaaaacaataatcaaaccagc |
36527304 |
T |
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| Q |
201 |
ccaaactacctctacttattattgtccattcaaactgcactaaacatgatcatgctcaacattgatccttgctgacatggaaa-ccgaaaaataatatga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36527303 |
ccaaactacctctacttattattgtccattcaaactgcactaaacatgatcatgctcaacattgatccttgctgacatggaaacccgaaaaataatatga |
36527204 |
T |
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| Q |
300 |
tgtagtctc |
308 |
Q |
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||||||||| |
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| T |
36527203 |
tgtagtctc |
36527195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 36553923 - 36553874
Alignment:
| Q |
242 |
aaacatgatcatgctcaacattgatccttgctgacatggaaaccgaaaaa |
291 |
Q |
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| T |
36553923 |
aaacatgatcatgctcaacaatgatccttgatgacatggaaaccggaaaa |
36553874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 36553995 - 36553935
Alignment:
| Q |
100 |
caaaacagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcat |
160 |
Q |
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| T |
36553995 |
caaaacagtagaagcctcgatgctattcatccttaatgtttcacatttgctcctcaagcat |
36553935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 36533545 - 36533486
Alignment:
| Q |
219 |
ttattgtccattcaaact-gcactaaacatgatcatgctcaacattgatccttgctgaca |
277 |
Q |
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||||| ||||||||| || || ||||||||||||||||| |||| ||||||||||||||| |
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| T |
36533545 |
ttattctccattcaaccttgccctaaacatgatcatgctaaacaatgatccttgctgaca |
36533486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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