View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13918_low_2 (Length: 569)
Name: NF13918_low_2
Description: NF13918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13918_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 7642481 - 7642218
Alignment:
| Q |
18 |
ggaggggcagcctggccttcggttttgactgtggaatggattgtctgaattagtctaacgtacgaaatttaatttctaaagattttaaaggttgtcggtg |
117 |
Q |
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| T |
7642481 |
ggaggggcagcatggccttcggttttgactgtggaatggattgtctgaattagtctaacgtacgaaatttaatttctaaagattttaaaggttgtcggtg |
7642382 |
T |
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| Q |
118 |
ccctaaatatagtcacatgtttttcctgctttaattaaatcaatgtaacttcttttattcaaatcaaacaaatagagacactagaaattggtctgtttac |
217 |
Q |
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| T |
7642381 |
ccctaaatatagtcacatgtttttcctgctttaattaaattaatgtaacttcttttattcaaatcaaacaaat--agacactagaaattggtctgtttac |
7642284 |
T |
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| Q |
218 |
tcnnnnnnnaggtacaaa-gcttaagttcgtcttccannnnnnngaagtaattagagtgaaacctg |
282 |
Q |
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| T |
7642283 |
tctttttttaggtacaaaggcttaagttcgtcttccatttttttgaagtaactagagtgaaacctg |
7642218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 348 - 569
Target Start/End: Complemental strand, 7642152 - 7641932
Alignment:
| Q |
348 |
actttataacctaatataaactccagagtgcttagagattgaacagtt-gctactcaaatatggattatacgtgttcccacctctccttgtaaccaaaac |
446 |
Q |
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| T |
7642152 |
actttataacctaatataaactccagagtgcttagagattgaacattttgctactcaaatatggattaaactggttcccacctcaccttgtaaccaaaaa |
7642053 |
T |
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| Q |
447 |
agaacaggtttcttacattttctcctatactgcttacttgattaggttaccaacgtggctacgggattactgtattcaaatttgtgtgttggttttgaga |
546 |
Q |
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| T |
7642052 |
aga-cag-tgtattacattttctcctatactgcttacttgattaggttaccaacgtggctactggattactgtattcatatttgtgtgttggttttgaga |
7641955 |
T |
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| Q |
547 |
gagtactggagtggaaaggtgcc |
569 |
Q |
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| T |
7641954 |
gagtactggagtggaaaggtgcc |
7641932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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