View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13918_low_3 (Length: 504)
Name: NF13918_low_3
Description: NF13918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13918_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 3 - 484
Target Start/End: Original strand, 4441848 - 4442331
Alignment:
| Q |
3 |
ggtaaattattcttatgttagttatttgaagtttgcttcatcatttatatagagtaagttagtaactaactaacgaaaaattatatctttactaatcatg |
102 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
4441848 |
ggtaaattagtcttatgttagttatttgatgtttgctttatcatatatatagagtaagttagtaactaactaacgaaaagttatatctctactaatcatg |
4441947 |
T |
|
| Q |
103 |
atttctttatagatagatat--agttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaaga |
200 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441948 |
atttctttatagatatatatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaaga |
4442047 |
T |
|
| Q |
201 |
atttcgctatttgcttcatttagagctcattcttccctggtttaactccaattctctgctttccttgcttcaaaaatgtcctgtgctacaagttctcaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4442048 |
atttcgctatttgcttcatttagagctcattcttccctggtttaactccaattatctgctttccttgcttcaaaaatgtcctgtgctacaagttctcaaa |
4442147 |
T |
|
| Q |
301 |
attcagaacaaggtttgtttaatcgacgcttaatacgaaattaaccaatttttattaaatagattacataaatcagaagtaatatattattgaaaagtac |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4442148 |
attcagaacaaggtttgtttaattgacgcttaatacgaaattaaccaatttttattaaatagattacataaatcagaagtaatatattattgaaaagtag |
4442247 |
T |
|
| Q |
401 |
accacccaatatataacatgattaattcattacaatgaaaattgcatcttattcaagtcttttgttgcctacaggaacagtcac |
484 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4442248 |
accacccaatatataacatgattaattcattacaatgaacattgcatcttattcaagtcttttgttgcctacaggaacagtcac |
4442331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 479
Target Start/End: Original strand, 17478260 - 17478652
Alignment:
| Q |
110 |
tatagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgcta |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||| | || || |||||||||||||||||||||| | ||||| ||||||||||||||| ||| |
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|
| T |
17478260 |
tatagatagatatatttttgtactaattagtagttggtgtcttgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcacta |
17478359 |
T |
|
| Q |
210 |
tttgcttcatttagagctcattcttccctggtttaactccaattctctgctttccttgcttcaaaaatgtcctgtgctacaagttctcaaaattcagaac |
309 |
Q |
| |
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|||| | | | ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||| |||||||| | |||||||||| |
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|
| T |
17478360 |
tttgatacgtctagagctcattcttctctggtttaactccaattctctgctcagcttgcttcagaaatgtccgatgctgcaagttcttataattcagaac |
17478459 |
T |
|
| Q |
310 |
---aaggtttgtttaatcgacgcttaa--------------------tacgaaattaaccaatttttattaaatagattacataaatcagaagtaatata |
386 |
Q |
| |
|
||||||||| ||||||| |||||| | ||||||||||||||||||| ||||||||||||| ||| |||||| ||| |
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|
| T |
17478460 |
gacaaggtttgtataatcgaagcttaatctgctctatctaattttgatgtgaaattaaccaatttttatgaaatagattacatgaattagaagttttatc |
17478559 |
T |
|
| Q |
387 |
ttattgaaaagtacaccacccaatatataacatgattaattcattacaatgaaaattgcatcttattcaagtcttttgttgcctacaggaaca |
479 |
Q |
| |
|
|||||| | | |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
17478560 |
ttattgcacaatacaccacttaatatataacatgattaattcattactatgaatattgcatcttattcaagtcctttgttgcctacagcaaca |
17478652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 115 - 324
Target Start/End: Complemental strand, 32849402 - 32849189
Alignment:
| Q |
115 |
atagatatagttttgtactaattgctacttgataatgtgg-acgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttg |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | | | || ||||||||||||||| |||||| | ||||||| |||||||||||||||| ||||| |
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|
| T |
32849402 |
atagatatagttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttg |
32849303 |
T |
|
| Q |
214 |
cttcatttagagctcattcttccctggtttaactccaattctctgctttccttgcttcaaaaatgtcctgtgctacaagttctcaaaattc---agaaca |
310 |
Q |
| |
|
||| |||||||||||||||||||||||| | ||||| |||||| |||||||||| |||||||| |||| |||||||||| |||| |||||| |
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|
| T |
32849302 |
gttcgcctagagctcattcttccctggtttagattcaattatctgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaagaaca |
32849203 |
T |
|
| Q |
311 |
aggtttgtttaatc |
324 |
Q |
| |
|
||||| |||||||| |
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|
| T |
32849202 |
aggttagtttaatc |
32849189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 118 - 484
Target Start/End: Complemental strand, 8366778 - 8366390
Alignment:
| Q |
118 |
gatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttc |
217 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||| |
|
|
| T |
8366778 |
gatatggttttgtactaattaatacttgacaatgcggacgaacagtggctgcttggtgaaccccgtgatctactttttcaagatttttgctatctgcttc |
8366679 |
T |
|
| Q |
218 |
atttagagctcattcttccctggtttaactccaattctctgctttccttgcttcaaaaatgtcctgtgctacaagttctcaaaattcaga---acaaggt |
314 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| || ||||||||| ||||||||| | || || ||||| |||||||| | | ||||| |
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|
| T |
8366678 |
atttagatatcattcttccctggtttgactccaattctcttctcagcttgcttcacaaatgtcctattcttcaggttcttaaaattcaaaattataaggt |
8366579 |
T |
|
| Q |
315 |
ttgtttaatcgacgctta------------------atacgaaattaaccaatttttattaaatagattacataaatcagaagtaatatattattgaaaa |
396 |
Q |
| |
|
||||||||| | ||||| || ||||||||||||| |||||| ||||||||||||||||| ||||||| || |||||||| | |
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|
| T |
8366578 |
atgtttaatcaaagcttaatttgatctacaactttgatgcgaaattaaccaaattttataaaatagattacataaattagaagtagcatcttattgaaca |
8366479 |
T |
|
| Q |
397 |
gtacaccacccaatatataacatgattaattcattacaatgaaaattgcatcttattcaag-tcttttgttgcctacaggaacagtcac |
484 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
8366478 |
gtacaccactgaataaataacatgattaattcattcctatgaatattgcatcttattcaagaccttttgttgcctacaggaacagtcac |
8366390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 110 - 484
Target Start/End: Complemental strand, 8382789 - 8382391
Alignment:
| Q |
110 |
tatagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgcta |
209 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| || | |
|
|
| T |
8382789 |
tatagatatatatggttttgtactaattaatacttgacaatgcggacgaacagtggctgcttggtgaaccccgtgatctactttttcaagaattttgcaa |
8382690 |
T |
|
| Q |
210 |
tttgcttcatttagagctcattcttccctggtttaactccaattctctgctttccttgcttcaaaaatgtcctgtgctacaagttctcaaaattcagaac |
309 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| |||||||||||| || ||||||||| ||||||||| | || | |||||| ||||||| ||| |
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|
| T |
8382689 |
tttgcttcatttagatctcactcttccctggtttagctccaattctctcctcagcttgcttcacaaatgtcctattcttcgagttcttaaaattcgaaac |
8382590 |
T |
|
| Q |
310 |
aagg---tttgtttaatcgacgcttaa--------------------tacgaaattaaccaatttttattaaata--gattacataaatcagaagtaata |
384 |
Q |
| |
|
|||| ||||||||||| | |||||| | | ||||||| ||||| | || ||||| |||||||||||| ||||||| | |
|
|
| T |
8382589 |
aaggaggtttgtttaatcaaagcttaatttgatctacataactttgatgcaaaattaatcaattctaatgaaatattgattacataaattagaagtagca |
8382490 |
T |
|
| Q |
385 |
tattattgaaaagtacaccacccaatatataacatgattaattcattacaatgaaaattgcatcttattcaagt-cttttgttgcctacaggaacagtca |
483 |
Q |
| |
|
| |||||||| |||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| |||||| ||| |||||||| |
|
|
| T |
8382489 |
tcttattgaacagtacaccacttaatatataacatgattaattcatt--aatgaatattgcatcttattcaagtccttttcttgcctgcagaaacagtca |
8382392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 8382858 - 8382806
Alignment:
| Q |
15 |
ttatgttagttatttgaagtttgcttcatcatttatatagagtaagttagtaa |
67 |
Q |
| |
|
|||| |||||||||||| |||| |||||| |||||||| | |||||||||||| |
|
|
| T |
8382858 |
ttattttagttatttgatgtttacttcataatttatatggtgtaagttagtaa |
8382806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 308
Target Start/End: Original strand, 8341314 - 8341511
Alignment:
| Q |
111 |
atagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctat |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| || ||||||||||||| |||||||| | ||| | ||||||||||||||| ||| |
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|
| T |
8341314 |
atagatagatatagttttgtactaattactacttgatatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatat |
8341413 |
T |
|
| Q |
211 |
ttgcttcatttagagctcattcttccctggtttaactccaattctctgctttccttgcttcaaaaatgtcctgtgctacaagttctcaaaattcagaa |
308 |
Q |
| |
|
||| ||| | |||||| ||||| ||||||||||||| |||||||| || |||| |||| |||||||| |||| ||| ||||| ||||||||| |
|
|
| T |
8341414 |
ttgattcgccttgagctcgttctttcctggtttaactcaaattctcttctccacttgattcagaaatgtcccttgctccaacctctcataattcagaa |
8341511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 8341611 - 8341673
Alignment:
| Q |
416 |
acatgattaattcattacaatgaaaattgcatcttattcaagtcttttgttgcctacaggaac |
478 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||| | | |||||||| ||||||||| |
|
|
| T |
8341611 |
acatgattaattcattattaagaatattgcatcttattcatgccctttgttgcttacaggaac |
8341673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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