View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13918_low_4 (Length: 485)

Name: NF13918_low_4
Description: NF13918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13918_low_4
NF13918_low_4
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-470)||(42489-42958)
[»] chr6 (4 HSPs)
chr6 (202-262)||(3525166-3525226)
chr6 (194-250)||(28776629-28776685)
chr6 (194-250)||(28798333-28798389)
chr6 (203-247)||(33385586-33385630)
[»] chr2 (1 HSPs)
chr2 (193-250)||(32821863-32821920)
[»] chr5 (3 HSPs)
chr5 (191-235)||(32190960-32191004)
chr5 (201-235)||(13264072-13264106)
chr5 (201-241)||(35095753-35095793)
[»] scaffold0024 (1 HSPs)
scaffold0024 (201-248)||(27632-27679)
[»] chr3 (4 HSPs)
chr3 (196-247)||(24624267-24624318)
chr3 (196-247)||(26542594-26542645)
chr3 (191-248)||(37155057-37155114)
chr3 (191-248)||(37200412-37200469)
[»] chr4 (3 HSPs)
chr4 (194-248)||(23819145-23819199)
chr4 (206-238)||(1404482-1404514)
chr4 (191-239)||(37734063-37734111)
[»] scaffold0012 (1 HSPs)
scaffold0012 (204-248)||(38648-38692)
[»] chr8 (1 HSPs)
chr8 (196-248)||(30259170-30259222)
[»] chr7 (2 HSPs)
chr7 (206-250)||(753179-753223)
chr7 (196-248)||(22388454-22388506)


Alignment Details
Target: scaffold0032 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 42489 - 42958
Alignment:
Q  1 atattgatacagaagaaagtattcaaaatacattggagcccggagatagaacggacgataggccatcatactgattaagcaaagggcatactgcgcaaga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42489 atattgatccagaagaaagtattcaaaatacattggagcccggagatagaacggacgataggccatcatactgattaagcaaagggcatactgcgcaaga 42588  T
Q  101 ggttcctgaaactttagtttataagctattttcgaaattctgtttttgtttggtttgagatatttgaatttgaatttatttagtgatacgaacatttgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42589 ggttcctgaaactttagtttataagctattttcgaaattctgtttttgtttggtttgagatatttgaatttgaatttatttagtgatacgaacatttgta 42688  T
Q  201 agactgtttggaagagtttatggaaatagcttatgatatgtctataagctcaataggatagctaatgaaaccattatacataagtatttatatgatatac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42689 agactgtttggaagagtttatggaaatagcttatgatatgtctataagctcaataggatagctaatgaaaccattatacataagtatttatatgatatac 42788  T
Q  301 gcttaggattgaagggtttaataaattgtttatccaaaaagagccatatgttgaattgaaatttaagtaatatcgaggagtcttaacttttgctttagct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42789 gcttaggattgaagggtttaataaattgtttatccaaaaagagccatatgttgaattgaaatttaagtaatatcgaggagtcttaacttttgctttagct 42888  T
Q  401 gacaaagaatctatatttaaatatcagcatattttcaagatggctcccctatatattcagctgaggctat 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42889 gacaaagaatctatatttaaatatcagcatattttcaagatggctcccctatatattcagctgaggctat 42958  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 3525226 - 3525166
Alignment:
Q  202 gactgtttggaagagtttatggaaatagcttatgatatgtctataagctcaataggatagc 262  Q
    ||||||| |||||||||||||||||||| |||||| ||||| ||||||||  |||||||||    
T  3525226 gactgttcggaagagtttatggaaatagtttatgacatgtccataagctctctaggatagc 3525166  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 28776685 - 28776629
Alignment:
Q  194 atttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataagct 250  Q
    |||||| ||||| ||||| |||||||| ||||| |||||||||  ||||||||||||    
T  28776685 atttgtgagactatttgggagagtttaaggaaacagcttatgacttgtctataagct 28776629  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 28798389 - 28798333
Alignment:
Q  194 atttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataagct 250  Q
    |||||| ||||| ||||| |||||||| ||||| |||||||||  ||||||||||||    
T  28798389 atttgtgagactatttgggagagtttaaggaaacagcttatgacttgtctataagct 28798333  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 33385630 - 33385586
Alignment:
Q  203 actgtttggaagagtttatggaaatagcttatgatatgtctataa 247  Q
    |||||||||||||||||||||||| |||| |||| ||||| ||||    
T  33385630 actgtttggaagagtttatggaaacagctcatgacatgtccataa 33385586  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 32821920 - 32821863
Alignment:
Q  193 catttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataagct 250  Q
    |||||| |||||||||||||||||||||| |||| | ||||||| ||||| |||||||    
T  32821920 catttgcaagactgtttggaagagtttatagaaacaacttatgacatgtccataagct 32821863  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 32191004 - 32190960
Alignment:
Q  191 aacatttgtaagactgtttggaagagtttatggaaatagcttatg 235  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||    
T  32191004 aacacttgttagactgtttggaagagtttatggaaacagcttatg 32190960  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 13264072 - 13264106
Alignment:
Q  201 agactgtttggaagagtttatggaaatagcttatg 235  Q
    |||||||||||||||||||||||||| ||||||||    
T  13264072 agactgtttggaagagtttatggaaacagcttatg 13264106  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 35095753 - 35095793
Alignment:
Q  201 agactgtttggaagagtttatggaaatagcttatgatatgt 241  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  35095753 agactgtttggaagagcttatggaaatatcttatgacatgt 35095793  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 27679 - 27632
Alignment:
Q  201 agactgtttggaagagtttatggaaatagcttatgatatgtctataag 248  Q
    ||||||||||| |||| ||||||||||||||||||| ||| |||||||    
T  27679 agactgtttgggagagcttatggaaatagcttatgacatggctataag 27632  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 24624318 - 24624267
Alignment:
Q  196 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataa 247  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| ||||| ||||    
T  24624318 ttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataa 24624267  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 26542645 - 26542594
Alignment:
Q  196 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataa 247  Q
    ||||||||||||||||||||| |||  |||| | ||||||||||||||||||    
T  26542645 ttgtaagactgtttggaagagcttactgaaacaacttatgatatgtctataa 26542594  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 37155114 - 37155057
Alignment:
Q  191 aacatttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 248  Q
    ||||||||| |||||||| | ||||||||||||||||| ||||| | ||||| |||||    
T  37155114 aacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataag 37155057  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 37200469 - 37200412
Alignment:
Q  191 aacatttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 248  Q
    ||||||||| |||||||| | ||||||||||||||||| ||||| | ||||| |||||    
T  37200469 aacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataag 37200412  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 23819199 - 23819145
Alignment:
Q  194 atttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 248  Q
    |||||| |||||||||||||||||||| | ||| ||||||||| ||||| |||||    
T  23819199 atttgtgagactgtttggaagagtttaagaaaacagcttatgacatgtccataag 23819145  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 1404514 - 1404482
Alignment:
Q  206 gtttggaagagtttatggaaatagcttatgata 238  Q
    ||||||||||| |||||||||||||||||||||    
T  1404514 gtttggaagaggttatggaaatagcttatgata 1404482  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 37734111 - 37734063
Alignment:
Q  191 aacatttgtaagactgtttggaagagtttatggaaatagcttatgatat 239  Q
    ||||||||| | | ||||| | |||||||||||||||||||||||||||    
T  37734111 aacatttgtgaaattgttttggagagtttatggaaatagcttatgatat 37734063  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 38692 - 38648
Alignment:
Q  204 ctgtttggaagagtttatggaaatagcttatgatatgtctataag 248  Q
    ||||||||| ||||||||||||||| ||||||| ||||| |||||    
T  38692 ctgtttggaggagtttatggaaataacttatgacatgtccataag 38648  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 30259222 - 30259170
Alignment:
Q  196 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 248  Q
    |||||| ||| ||||  |||| ||||||||| |||||||||||||||||||||    
T  30259222 ttgtaaaactatttgagagagcttatggaaacagcttatgatatgtctataag 30259170  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 753179 - 753223
Alignment:
Q  206 gtttggaagagtttatggaaatagcttatgatatgtctataagct 250  Q
    |||||| |||| ||||||||||||||||||| || ||||||||||    
T  753179 gtttggtagagcttatggaaatagcttatgacatatctataagct 753223  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 22388454 - 22388506
Alignment:
Q  196 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 248  Q
    |||| ||||||||||| | || |||||||||||||||| |||||||| |||||    
T  22388454 ttgtgagactgtttggtaaagcttatggaaatagcttaagatatgtccataag 22388506  T

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