View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13918_low_5 (Length: 358)

Name: NF13918_low_5
Description: NF13918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13918_low_5
NF13918_low_5
[»] scaffold0083 (1 HSPs)
scaffold0083 (19-352)||(54372-54700)
[»] chr3 (25 HSPs)
chr3 (19-352)||(9980437-9980765)
chr3 (19-352)||(10034974-10035302)
chr3 (19-352)||(10263672-10264000)
chr3 (19-304)||(9841829-9842109)
chr3 (19-304)||(9852848-9853128)
chr3 (19-352)||(10129893-10130214)
chr3 (19-304)||(10520456-10520736)
chr3 (19-261)||(10430898-10431139)
chr3 (25-257)||(10666512-10666742)
chr3 (25-296)||(10583559-10583829)
chr3 (19-261)||(10360658-10360899)
chr3 (70-246)||(11772256-11772429)
chr3 (67-261)||(10372768-10372961)
chr3 (70-246)||(11778856-11779029)
chr3 (78-257)||(10503681-10503857)
chr3 (284-352)||(10430718-10430786)
chr3 (21-199)||(10091968-10092146)
chr3 (21-199)||(10198850-10199028)
chr3 (19-259)||(10531752-10531989)
chr3 (19-200)||(10680550-10680731)
chr3 (146-225)||(10086273-10086352)
chr3 (146-225)||(10193193-10193272)
chr3 (163-210)||(8585531-8585578)
chr3 (19-50)||(10503553-10503584)
chr3 (20-100)||(9852780-9852860)
[»] chr4 (1 HSPs)
chr4 (19-225)||(17849815-17850021)
[»] chr2 (1 HSPs)
chr2 (19-209)||(26909859-26910049)
[»] chr8 (1 HSPs)
chr8 (19-225)||(44954552-44954757)


Alignment Details
Target: scaffold0083 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 54700 - 54372
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||||||||||||||||| |||| |||| | |   ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  54700 aaaactgcctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaact 54601  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
       |||   | | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||    
T  54600 gtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtc 54501  T
Q  219 acaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctctta 318  Q
    ||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  54500 acaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctctta 54406  T
Q  319 atattttcatatcatctcatgggtcctatgctac 352  Q
    ||||||||||||||||||||||||||| ||||||    
T  54405 atattttcatatcatctcatgggtcctctgctac 54372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 9980437 - 9980765
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||||||||||||||||| |||| |||| | |   ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  9980437 aaaactgcctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaact 9980536  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
       |||   | | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||    
T  9980537 gtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtc 9980636  T
Q  219 acaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctctta 318  Q
    ||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  9980637 acaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctctta 9980731  T
Q  319 atattttcatatcatctcatgggtcctatgctac 352  Q
    ||||||||||||||||||||||||||| ||||||    
T  9980732 atattttcatatcatctcatgggtcctctgctac 9980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 10034974 - 10035302
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||||||||||||||||| ||||  |||||     ||||||||||| |||||||||||||||||||||||| |||||||||||| | ||||    
T  10034974 aaaactgcctcccttcctcgctgaaatcacttagattgtgggattgtaaaaagcttgagtcattaccagaagacagcctcactgactctcttagggaact 10035073  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
       |||||  |  || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| | ||||||    
T  10035074 ctgcatttggaattgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatagatataaatcatgaagtc 10035173  T
Q  219 acaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctctta 318  Q
    ||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  10035174 acaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctctta 10035268  T
Q  319 atattttcatatcatctcatgggtcctatgctac 352  Q
    ||||||||||||||||||||||||||| ||||||    
T  10035269 atattttcatatcatctcatgggtcctctgctac 10035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 10263672 - 10264000
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||||||||||||||||| ||||| |||| || ||||| |||||||||||||||||||||||||||||||||||  ||||||||| | |||    
T  10263672 aaaactgcctcccttcctcgctgaaatcacttctattgcttggatgtgaaaagctagagtcattaccagaagacagcctcccttcctctcttaaactact 10263771  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
     |  ||       || |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||||   |||||||| ||||||    
T  10263772 cgctatcgagttttgcccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatgaagtc 10263871  T
Q  219 acaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctctta 318  Q
    ||||||| || ||| |||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  10263872 acaatatgat-aga-caagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctctta 10263966  T
Q  319 atattttcatatcatctcatgggtcctatgctac 352  Q
    ||||||||||||||||||||||||||| ||||||    
T  10263967 atattttcatatcatctcatgggtcctctgctac 10264000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 9841829 - 9842109
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||||||||||||||||| ||||  |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||  ||    
T  9841829 aaaactgcctcccttcctcgctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttgagcgtct 9841928  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
       |||||   ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||  || |||||    
T  9841929 gaacatttggggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatggataaaccaccaagtc 9842028  T
Q  219 acaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 304  Q
    | ||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9842029 agaatatgat-ag-acaagttgtgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 9852848 - 9853128
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||| || |||||||||| |||| ||||||    |||| |||||||||||||||||||||||||||||||||||||||| || |||  |||    
T  9852848 aaaactgcctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactcactgaagagact 9852947  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
     | ||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||     
T  9852948 ggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagaaataaatgaccaggtt 9853047  T
Q  219 acaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 304  Q
    ||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9853048 acaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9853128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 10129893 - 10130214
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgat-gtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaac 117  Q
    ||||||||||||||||||||||||||| |||| | || ||  ||| || ||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  10129893 aaaactgcctcccttcctcgctgaaatcacttgactt-ttgggattgtgaaaagctagagtcattaccagaagacagcctccctgattctcttatgcaac 10129991  T
Q  118 tagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagt 217  Q
    |   ||||    ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| | |||| ||      ||     
T  10129992 tgtgcattcaaggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctttcaaaaatatcaa------agg 10130085  T
Q  218 cacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctctt 317  Q
    |||||||| || ||| |||||||||||||  ||||||||||| |||  |||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  10130086 cacaatatgat-aga-caagttgtgttcccatttcaggtatgctcct-agttcctaccagaaa---gccaataatcaatcctctgtacgacacacctctt 10130179  T
Q  318 aatattttcatatcatctcatgggtcctatgctac 352  Q
    |||||||||||||||||||||||||||| ||||||    
T  10130180 aatattttcatatcatctcatgggtcctctgctac 10130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 10520456 - 10520736
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    |||||||||||||||||||||||||||||||| | ||||    |||| |||||||  | |||||||||||||||||||||||||||||||| |||  |||    
T  10520456 aaaactgcctcccttcctcgctgaaattacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccctgactctctgaagagact 10520555  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
      ||||||    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||| || |||||    
T  10520556 gctcatttgggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagtcatatcaataaattaccaagtc 10520655  T
Q  219 acaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 304  Q
    ||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  10520656 acaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 10520736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 10431139 - 10430898
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||||||||||||||||| |||| | ||||    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10431139 aaaactgcctcccttcctcgctgaaatcacttgatttgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaact 10431040  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
        |||     |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||    
T  10431039 gagaattagggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagatataaatgatgaagtc 10430940  T
Q  219 acaatatcatgagaacaagttgtgttccag-tttcaggtatgtt 261  Q
    ||||||| || || |||||||||||||||| |||||||||||||    
T  10430939 acaatatgat-ag-acaagttgtgttccagttttcaggtatgtt 10430898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 10666512 - 10666742
Alignment:
Q  25 gcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcat 124  Q
    ||||||||||||||||||||| |||| ||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||   |||    
T  10666512 gcctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaaggaactgcacat 10666611  T
Q  125 ttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaata 224  Q
    |     |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||||||||    
T  10666612 tgaggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaata 10666711  T
Q  225 tcatgagaacaagttgtgttccagtttcaggta 257  Q
    | || || || ||||||||||| ||||||||||    
T  10666712 tgat-ag-acgagttgtgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 25 - 296
Target Start/End: Original strand, 10583559 - 10583829
Alignment:
Q  25 gcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcat 124  Q
    ||||||||||||||||||||| |||||||||  |  | |||  ||  || |||||||||||||||||||||||||||||||||||| ||| |||   |||    
T  10583559 gcctcccttcctcgctgaaatcacttcaatttgtgggttgtgtaagactcgagtcattaccagaagacagcctccctgactctcttgagcgactgaccat 10583658  T
Q  125 ttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaata 224  Q
           || |||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| | |||||| || |||||||||||    
T  10583659 ccaattttgcccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaatcacaaagtcacaata 10583758  T
Q  225 tcatgagaacaagttgtgttccag-tttcaggtatgttccacagttcctaccagaaaactgccaataatcaat 296  Q
    | || || |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10583759 tgat-ag-acaagttgtgttcccgttttcaggtatgttccacatttcctaccagaaaactgccaataatcaat 10583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 10360899 - 10360658
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||||||||||||||||| ||||  ||| | | | ||| |||||||  | |||||||||||||||||||||||||||||||||||| ||||    
T  10360899 aaaactgcctcccttcctcgctgaaatcacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccctgactctcttaaggaact 10360800  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
     | ||| | |   || |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||| | ||||| ||| |||||    
T  10360799 ggacatctatgattgcccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataaaaataaacgaccaagtc 10360700  T
Q  219 acaatatcatgagaacaagttgtgttccag-tttcaggtatgtt 261  Q
    ||||||| || || |||||||||||||| | |||||||||||||    
T  10360699 acaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 70 - 246
Target Start/End: Original strand, 11772256 - 11772429
Alignment:
Q  70 agctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaaca 169  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||   |||||   |||| |||||||||| |||||||||||||||||| |||||    
T  11772256 agcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaaca 11772355  T
Q  170 gtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttcc 246  Q
     ||||||||||| |||||||||||||||||| ||||||||||  ||||||||||   ||||||||||| ||||||||    
T  11772356 ttggtccaaaatcgctcacatccctgtcatagatataaatgaaaaagtcacaat---atgagaacaagctgtgttcc 11772429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 67 - 261
Target Start/End: Complemental strand, 10372961 - 10372768
Alignment:
Q  67 aaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaagga 166  Q
    ||||||| |||||||||||||||||||||||||||  |||||| |||  ||| |||||| |  |||| |||||||||| |||||||||||||||||||||    
T  10372961 aaaagcttgagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaagga 10372862  T
Q  167 acagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt 261  Q
    ||| ||||||||||||||||||||||| |||||| | ||||| ||| || ||||||||| || || |||||||||||||| | |||||||||||||    
T  10372861 acattggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 11779029 - 11778856
Alignment:
Q  70 agctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaaca 169  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||   |||||   |||| |||||||||| |||||||||||||||||| |||||    
T  11779029 agcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaaca 11778930  T
Q  170 gtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttcc 246  Q
     ||||||||||| |||||||||||||||||| | ||||||||  ||||||||||   ||||||||||| ||||||||    
T  11778929 ttggtccaaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaat---atgagaacaagctgtgttcc 11778856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 78 - 257
Target Start/End: Original strand, 10503681 - 10503857
Alignment:
Q  78 tcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtcca 177  Q
    |||||||||||||||||||| ||||| |||||||||| |||  |||||   ||||| |||   |||| |||||||||||||||||||||||| |||||||    
T  10503681 tcattaccagaagacagccttcctgattctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaaggaaggaacattggtcca 10503780  T
Q  178 aaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta 257  Q
    ||||| ||||||||||||||||| | ||| |||   ||||||||||   ||||| ||| | |||||||| ||||||||||    
T  10503781 aaatttctcacatccctgtcatagaaatagatggacaagtcacaat---atgaggacaggctgtgttcccgtttcaggta 10503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 10430786 - 10430718
Alignment:
Q  284 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10430786 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 10091968 - 10092146
Alignment:
Q  21 aactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactag 120  Q
    ||||||||||| ||||||||||||| ||||  ||||  |   ||||||| ||| || ||||||||||||||||||||||||   |||||||     ||      
T  10091968 aactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctcccttcatctcttatcactctgt 10092067  T
Q  121 tcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 199  Q
     |||| |  |||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10092068 acattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10092146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 10198850 - 10199028
Alignment:
Q  21 aactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactag 120  Q
    ||||||||||| ||||||||||||| ||||  ||||  |   ||||||| ||| || ||||||||||||||||||||||||   |||||||     ||      
T  10198850 aactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctcccttcatctcttatcactctgt 10198949  T
Q  121 tcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 199  Q
     |||| |  |||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10198950 acattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 10531752 - 10531989
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    |||| |||||||||||||||||||| | ||||||||| |   | |||  ||  || |||||||||||||||||||||||||||  |||||||||   |||    
T  10531752 aaaattgcctcccttcctcgctgaagtcacttcaattttcgagttgtgtaagacttgagtcattaccagaagacagcctcccttcctctcttaa---act 10531848  T
Q  119 agtcattttt-agatgt--ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaa 215  Q
    | ||| | |  || | |  |||||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||   |||||  |  ||    
T  10531849 actcactatcgagttttgcccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcataataataaacaagcaa 10531948  T
Q  216 gtcacaatatcatgagaacaagttgtgttccagtttcaggtatg 259  Q
    || |||||   ||||  |||||||||||||| ||||||||||||    
T  10531949 gttacaat---atgaagacaagttgtgttcccgtttcaggtatg 10531989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 10680550 - 10680731
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    |||| |||||||||||||||||||||| ||||||||| ||  | |||  ||  || ||||  |||||||||||||||||||||  ||||||||| | |||    
T  10680550 aaaattgcctcccttcctcgctgaaatcacttcaatttttgagttgtgtaagacttgagttgttaccagaagacagcctcccttcctctcttaaactact 10680649  T
Q  119 ag---tcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata 200  Q
         |||  |||   || |||||||||| |||||||||||||||||| |||||  ||||||||||| |||||||||||||||||    
T  10680650 cactatcaagttt---tgcccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcata 10680731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 10086273 - 10086352
Alignment:
Q  146 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 225  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10086273 agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10086352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 10193193 - 10193272
Alignment:
Q  146 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 225  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10193193 agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10193272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 8585578 - 8585531
Alignment:
Q  163 aggaacagtggtccaaaattgctcacatccctgtcatatatataaatg 210  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcataaatataaatg 8585531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 10503553 - 10503584
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattactt 50  Q
    ||||||||||||||||||||||||||||||||    
T  10503553 aaaactgcctcccttcctcgctgaaattactt 10503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 9852780 - 9852860
Alignment:
Q  20 aaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc 100  Q
    |||||||||||| || |||||||||| |||| ||||  ||   ||||| ||||| ||||||||||||||| || |||||||    
T  9852780 aaactgcctcccatcatcgctgaaatcacttaaatttgttgattgtaagaagcttgagtcattaccagaaaactgcctccc 9852860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 17850021 - 17849815
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||||||||||||||| |||||||  ||| |||| | |   |||||||  || ||||| |||||||||||||||||||||  ||||||||||| |||    
T  17850021 aaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgact 17849922  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
     |||||||   |||| ||  | |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||  | ||| |||||    
T  17849921 ggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtc 17849822  T
Q  219 acaatat 225  Q
    |||||||    
T  17849821 acaatat 17849815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 26909859 - 26910049
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    |||||||||||||||||||||||||||  |||||||| | | | ||| | || || |||||||||||||||||||||||||| ||||||||| ||   ||    
T  26909859 aaaactgcctcccttcctcgctgaaatatcttcaattttatggctgtgagaaacttgagtcattaccagaagacagcctccccgactctcttgagatgct 26909958  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat 209  Q
     |  || |     || |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  26909959 ggaaatgtcatcttgcccattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat 26910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 44954757 - 44954552
Alignment:
Q  19 aaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaact 118  Q
    ||||||| || |||||||||||||||| ||||||||| ||    ||| || | || ||||| ||||||||||| ||||||||  |||||||||| | |||    
T  44954757 aaaactgtcttccttcctcgctgaaatcacttcaatttttgttttgtgaaga-cttgagtcgttaccagaagaaagcctccccaactctcttaatcgact 44954659  T
Q  119 agtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtc 218  Q
     |||||||   |||| ||  | | || ||||||||||| |||||||||||| ||||||||||||||| | || | ||||||| | ||| ||| | |||||    
T  44954658 ggtcatttggcgatgccctgtatcagaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtc 44954559  T
Q  219 acaatat 225  Q
    |||||||    
T  44954558 acaatat 44954552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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