View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13918_low_6 (Length: 276)
Name: NF13918_low_6
Description: NF13918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13918_low_6 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 40763897 - 40764172
Alignment:
| Q |
1 |
ttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40763897 |
ttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctgatgt |
40763996 |
T |
|
| Q |
101 |
tgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaagctggaagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40763997 |
tgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaagctaaacggaatgtatccaagctggaagaa |
40764096 |
T |
|
| Q |
201 |
agatctaaacttcagcccggtattcctcgaaaagatggaaaggtagattatgctaaagatttctttgcccgtcaag |
276 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40764097 |
agatctaaacttcagcccagtattcctcgaaaggatggaaagatagattatgctaaagatttctttgcccgtcaag |
40764172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 40763818 - 40763908
Alignment:
| Q |
42 |
gaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctaatgttgaagctgctaagcttgttgctcaggagaagg |
132 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40763818 |
gaagcagagaggttggagaaggaactgatacagaatcctcctcctactgaatctgatgttgaagctgctaagcttgttgttcaggagaagg |
40763908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 42911676 - 42911819
Alignment:
| Q |
133 |
agaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccggtattcctcgaaa |
232 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911676 |
agaaggagattagtgctgctgtggctgaacttaaaaaagcaaaagaaaatgtatccaagctggaggaaagatctaaacttcagcccggtattcctcgaaa |
42911775 |
T |
|
| Q |
233 |
agatggaaaggtagattatgctaaagatttctttgcccgtcaag |
276 |
Q |
| |
|
|| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
42911776 |
ggacggaaaggtggattatactaaagatttctttgcccgtcaag |
42911819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 42911546 - 42911636
Alignment:
| Q |
42 |
gaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctaatgttgaagctgctaagcttgttgctcaggagaagg |
132 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42911546 |
gaagcagagaggttggagaaggaactgatacagaatcctcctccaactgaagctgatgttgaagctgctaagcttgttgttcaggagaagg |
42911636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42911625 - 42911673
Alignment:
| Q |
1 |
ttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcaga |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
42911625 |
ttcaggagaagggggaggttgtttcacaattgaaatctgcaaaagcaga |
42911673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University