View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13918_low_7 (Length: 266)
Name: NF13918_low_7
Description: NF13918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13918_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 33821812 - 33822040
Alignment:
| Q |
4 |
gcccaaagatgaagaagaatggtggtagcacgaaatgatggtgattgactgatagttgcgtctttacttcaattgcatcaaatttcttcccttaaaacac |
103 |
Q |
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| T |
33821812 |
gcccaaagatgaagaagaatggtggtagcacgaaatgatggtgattgactgatagtcgcgtctttacttcaattgcatcaaat---ttcccttaaaacac |
33821908 |
T |
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| Q |
104 |
aacgaaacaataacaagagnnnnnnntgacatcgaccatttaaaatacagatacttgaaccaaatatgaatagagagaggattaaagtgaccgaaaaact |
203 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33821909 |
aacgaaacaataacaagag-aaaaaatgacatcgaccatttaaaatacagaaacttgaaccaaatatgaatagagagaggattaaagtgaccgaaaaact |
33822007 |
T |
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| Q |
204 |
tatacctacaacgaagactataatttctttatt |
236 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
33822008 |
tatacctacaacgaagactataattcctttatt |
33822040 |
T |
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