View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13918_low_8 (Length: 243)
Name: NF13918_low_8
Description: NF13918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13918_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15192879 - 15193103
Alignment:
| Q |
1 |
tgaaatccttgagaatctttcttctgatgatggaattgatttctgtattgatggagaaggggaacaactcgagttaggtaatattatcaccaatttgata |
100 |
Q |
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| T |
15192879 |
tgaaatccttgagaatctttcttctgatgatggaattgatttctgtattgatggagaaggggaacaactcgagttaggtaatattatcaccaatttgata |
15192978 |
T |
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| Q |
101 |
gctcggcagcagcgtcctaactcatcgcactacttctgcaagcctgcattgtgcgctcatcttggcatttgcaagtttgagacaggtttagttcagaagg |
200 |
Q |
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| T |
15192979 |
gctcggcagcagcttcctaactcatcccactacttctgcaagcctgcattgtgcgctcatcttggcatttgcaagtttgagacaggtttagttcagaagg |
15193078 |
T |
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| Q |
201 |
cagtactggtagccaatggtgcatc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
15193079 |
cagtactggtagccaatggtgcatc |
15193103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 15201975 - 15202192
Alignment:
| Q |
1 |
tgaaatccttgagaatctttcttctgatgatggaattgatttctgtattgatggagaaggggaacaactcgagttaggtaatattatcaccaatttgata |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |
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| T |
15201975 |
tgaaatccttgaaaatctttcttctgatgatggaattgatttatgtattgatggagaaggggaacaacttgagttaggtaacattatcaccgatttgata |
15202074 |
T |
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| Q |
101 |
gctcggcagcagcgtcctaactcatcgcactacttctgcaagcctgcattgtgcgctcatcttggcatttgcaagtttgagacaggtttagttcagaagg |
200 |
Q |
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| T |
15202075 |
gctcggcagcagcatcctaacgcatctcactacttccgtatgccagcattgtgcgctcatcttggcatttgcaagattgagacaagtttagttaagaagg |
15202174 |
T |
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| Q |
201 |
cagtactggtagccaatg |
218 |
Q |
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|||||||| |||||||| |
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| T |
15202175 |
cagtactgacagccaatg |
15202192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 15212877 - 15213094
Alignment:
| Q |
1 |
tgaaatccttgagaatctttcttctgatgatggaattgatttctgtattgatggagaaggggaacaactcgagttaggtaatattatcaccaatttgata |
100 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||| ||| |
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| T |
15212877 |
tgaaatccttgataatctttcttctaatgatggaattgatttctgtattgatgaagaaggggaacagctcgagttaggtaacattattgccaatttaata |
15212976 |
T |
|
| Q |
101 |
gctcggcagcagcgtcctaactcatcgcactacttctgcaagcctgcattgtgcgctcatcttggcatttgcaagtttgagacaggtttagttcagaagg |
200 |
Q |
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| T |
15212977 |
gctccgcagaagcttcctaactcagcccactacttccgtaagcctgcattgtgcgctcatctttccatttgcaagtttgagacaggtttagttaagaagg |
15213076 |
T |
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| Q |
201 |
cagtactggtagccaatg |
218 |
Q |
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||||||||| |||||||| |
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| T |
15213077 |
cagtactggcagccaatg |
15213094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 34035683 - 34035757
Alignment:
| Q |
19 |
ttcttctgatgatggaattgatttctgtattgatggagaaggggaacaactcgagttaggtaatattatcaccaa |
93 |
Q |
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||||||||| |||||||||||||||| || ||||||||||||| ||||||| ||||||| | ||||||||||| |
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| T |
34035683 |
ttcttctgacgatggaattgatttctttactgatggagaagggaaacaacttgagttagattcaattatcaccaa |
34035757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 34035817 - 34035890
Alignment:
| Q |
153 |
gcgctcatcttggcatttgcaagtttgagacaggtttagttcagaaggcagtactggtagccaatggtgcatct |
226 |
Q |
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|||||| |||||||||||||||||| ||||| |||||||| |||| ||| | || | ||||||||||| |||| |
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| T |
34035817 |
gcgctcttcttggcatttgcaagttcgagactggtttagtgaagaaagcaattcttgcagccaatggtgtatct |
34035890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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