View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13919_high_1 (Length: 468)
Name: NF13919_high_1
Description: NF13919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13919_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 43 - 441
Target Start/End: Complemental strand, 36826752 - 36826327
Alignment:
| Q |
43 |
attactcttccgttcgctattcataattgatttctgaatgaaagcatgggt---aaaaagaccaataagaccaagatccttctctcctttcgccgccgtt |
139 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||| | |
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| T |
36826752 |
attactctttcgttcgctattcataattaatttctgaatgaaaccatgggtggtaaaaagaccagcaagaccaagagccttctctcctttcgccgccgct |
36826653 |
T |
|
| Q |
140 |
ccaacaaacttccctcacctcc--------ctctgtcaccgacgctcaaaatcaccggttcaccgtctgagaatcgcctagtccctgaacc-nnnnnnnn |
230 |
Q |
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||||||||||||||||||| || ||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36826652 |
ccaacaaacttccctcaccgcctccccgctctccaccgccgacgctcgaaatcaccggttcaccgtctgagaatcgcctagtccctaaaccgaagaaaaa |
36826553 |
T |
|
| Q |
231 |
nntcggtggtgctagattgtggatgtggttcgaccagttcggtaagtctgaactagttg---------------ctat-tcccgctatgccgctattccc |
314 |
Q |
| |
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||||||||||||||| |||||| ||||||||| ||||||||||||||||| |||| | || |||| |||||||||||||| |
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| T |
36826552 |
aaccggtggtgctagattatggatgcggttcgaccgtttcggtaagtctgaactcgttgagtgggagaaaaataccataatccgccatgccgctattccc |
36826453 |
T |
|
| Q |
315 |
gctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaattaattcttgtttgtgaatt |
414 |
Q |
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||||||||| |||||||||| || | |||||||||||||||||||||||||||| ||||||||| ||||||| |||||| || | | | |||| |||||| |
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| T |
36826452 |
gctagagacctcagaattcttggccctgtcttctctcattcctccaatatcctcggtaattcaattttagggcttacaatttcaat-tagtttatgaatt |
36826354 |
T |
|
| Q |
415 |
aaggtttcatttttcctaattatttat |
441 |
Q |
| |
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| T |
36826353 |
agggtttcttgtttcttaattatttat |
36826327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 301 - 436
Target Start/End: Complemental strand, 33433445 - 33433310
Alignment:
| Q |
301 |
atgccgctattcccgctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaattaatt |
400 |
Q |
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| T |
33433445 |
atgccgccattcccgctagagacctcaaaattctcggtcatgtcttctctcattcctccaatatcctcgataattcaattttagggtttacaatttcaat |
33433346 |
T |
|
| Q |
401 |
cttgtttgtgaattaaggtttcatttttcctaatta |
436 |
Q |
| |
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| T |
33433345 |
ctagtttgtgaattaggatttcatgtttcttaatta |
33433310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 33433658 - 33433594
Alignment:
| Q |
94 |
aaaaagaccaataagaccaagatccttctctcctttcgccgccgttccaacaaacttccctcacc |
158 |
Q |
| |
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| T |
33433658 |
aaaaagacaagtaagaccaagagccttctctcctttcgctgccgctccaacaaacttccctcacc |
33433594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 33433526 - 33433478
Alignment:
| Q |
236 |
gtggtgctagattgtggatgtggttcgaccagttcggtaagtctgaact |
284 |
Q |
| |
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||||||||||||| |||||| |||| |||| ||||||||||| |||||| |
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| T |
33433526 |
gtggtgctagattatggatgcggtttgaccggttcggtaagtatgaact |
33433478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 19252223 - 19252100
Alignment:
| Q |
301 |
atgccgctattcccgctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaattaatt |
400 |
Q |
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||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || | | |
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| T |
19252223 |
atgccgccattcccgctagagacctcaaaattctcggtcatgtcttctctcattcctccaatatcctcgataattcaattttagggtttacaatttcaat |
19252124 |
T |
|
| Q |
401 |
cttgtttgtgaattaaggtttcat |
424 |
Q |
| |
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|| |||||||||||| | |||||| |
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| T |
19252123 |
ctagtttgtgaattaggatttcat |
19252100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 19252436 - 19252372
Alignment:
| Q |
94 |
aaaaagaccaataagaccaagatccttctctcctttcgccgccgttccaacaaacttccctcacc |
158 |
Q |
| |
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|||||||| | ||||||||||| |||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
19252436 |
aaaaagacaagtaagaccaagagccttctctcctttcgctgccgctccaacaaactttcctcacc |
19252372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 19252304 - 19252256
Alignment:
| Q |
236 |
gtggtgctagattgtggatgtggttcgaccagttcggtaagtctgaact |
284 |
Q |
| |
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||||||||||||| |||||| |||| |||| |||||||||||||||||| |
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| T |
19252304 |
gtggtgctagattatggatgcggtttgaccggttcggtaagtctgaact |
19252256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 25442213 - 25442173
Alignment:
| Q |
396 |
taattcttgtttgtgaattaaggtttcatttttcctaatta |
436 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
25442213 |
taattcttgtttgtgaattaaggtttcatttttcctaatta |
25442173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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