View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13919_low_2 (Length: 305)
Name: NF13919_low_2
Description: NF13919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13919_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 52 - 288
Target Start/End: Original strand, 36904815 - 36905051
Alignment:
| Q |
52 |
agttcatttgaagatatgcgaagaacatgggctttaggtgtggtcaatctgaaaccagggatccttcgtttctcttgttggtcaaggggcttcaaacccc |
151 |
Q |
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| T |
36904815 |
agttcatttgaagatatgcgaagaacatgggctttaggtgtggtcaatctgaaaccagggatccttcgtttctcttgttggtcaaggggcttcaaacccc |
36904914 |
T |
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| Q |
152 |
aagctcaggtgcaaacccatgctcagatttgggttatacttatgcatttgcctcaagaatattggaggaagacggccctttttgagattgctttcggttt |
251 |
Q |
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| T |
36904915 |
aagctcaggtgcaaacccatgctcagatttgggttatacttatgcatttgcctcaagaatattggaggaagacggccctttttgagattgctttcggttt |
36905014 |
T |
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| Q |
252 |
aggcactcctcttgctattgatgatgctactcttagt |
288 |
Q |
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| T |
36905015 |
aggcactcctcttgctattgatgatgctactcttagt |
36905051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 112 - 288
Target Start/End: Complemental strand, 28103126 - 28102951
Alignment:
| Q |
112 |
atccttcgtttctcttgttggtcaaggggcttcaaaccccaagctcaggtgcaaacccatgctcagatttgggttatacttatgcatttgcctcaagaat |
211 |
Q |
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| T |
28103126 |
atccttcgtttctcttgctggtcaaggggcttcaaaccccaagctcaagtgcgaacccatgctcagatttgggttagacttatgcattttcctcaagaat |
28103027 |
T |
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| Q |
212 |
attggaggaagacggccctttttgagattgctttcggtttaggcactcctcttgctattgatgatgctactcttagt |
288 |
Q |
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| T |
28103026 |
attggaggaagagaaccctttttgagattgcttatggtttaggcactcctcttgctattgatga-cctactcttagt |
28102951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 28105214 - 28105124
Alignment:
| Q |
23 |
tgggaaagggtttctttgagttccattttagttcatttgaagatatgcgaagaacatgggctttaggtgtggtcaatctgaaaccagggat |
113 |
Q |
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| T |
28105214 |
tgggaaagggtttctttgagttccattttagttcatttgaagatatgcgaagaacttgggctttgggtgtggtcaatttgaaaccagggat |
28105124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 44771734 - 44771929
Alignment:
| Q |
25 |
ggaaagggtttctttgagttccattttagttcatttgaagatatgcgaagaacatgggctttaggtgtggtcaatctgaaaccagggatccttcgtttct |
124 |
Q |
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| T |
44771734 |
ggaaagggtttcttcgagttcaatttcagttccattgatgatatgcgcacaatttgggcgttaggggtgatcaatctcaagcctgggtttcttcgcttct |
44771833 |
T |
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| Q |
125 |
cttgttggtcaaggggcttcaaaccccaagctcaggtgcaaacccatgctcagatttgggttatacttatgcatttgcctcaagaatattggagga |
220 |
Q |
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| T |
44771834 |
attgttggaccagagacttcaaacctcaagctctggtgcaaacacatgcacaaatttgggtgtgtcttatgcatttaccccaagaatactggagga |
44771929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 51523399 - 51523502
Alignment:
| Q |
115 |
cttcgtttctcttgttggtcaaggggcttcaaaccccaagctcaggtgcaaacccatgctcagatttgggttatacttatgcatttgcctcaagaatatt |
214 |
Q |
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| T |
51523399 |
cttcgtttctcctgttggactaggggtttcaagcctcaagctcaagtgcaaactcatgcccaaatttgggttaggctcatgcatttacctcaagaatatt |
51523498 |
T |
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| Q |
215 |
ggag |
218 |
Q |
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|||| |
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| T |
51523499 |
ggag |
51523502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 275
Target Start/End: Original strand, 38983111 - 38983295
Alignment:
| Q |
91 |
gtggtcaatctgaaaccagggatccttcgtttctcttgttggtcaaggggcttcaaaccccaagctcaggtgcaaacccatgctcagatttgggttatac |
190 |
Q |
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| T |
38983111 |
gtggtgaatatgaaacctgggttccttcgtttctactgctggacaaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggt |
38983210 |
T |
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| Q |
191 |
ttatgcatttgcctcaagaatattggaggaagacggccctttttgagattgctttcggtttaggcactcctcttgctattgatga |
275 |
Q |
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| T |
38983211 |
tgatgcacttaccccaagaatattagaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
38983295 |
T |
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