View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13919_low_3 (Length: 305)
Name: NF13919_low_3
Description: NF13919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13919_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 23257606 - 23257339
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23257606 |
gtatcactatggaacttctaaacttaatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
23257507 |
T |
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| Q |
119 |
ataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23257506 |
ataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctga |
23257407 |
T |
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| Q |
219 |
cttttattatatatgaaagaaaataatttgcaatttccaaatatagtctatcttgtcttattattctt |
286 |
Q |
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| T |
23257406 |
cttttattatatatgaaagaacataatttgcaatttccaaatatagtctatcttgtcttatttttctt |
23257339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 23251633 - 23251405
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaat-tttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtag |
117 |
Q |
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||||||||||||||||| |||| || || |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
23251633 |
gtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtag |
23251534 |
T |
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| Q |
118 |
cataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctg |
217 |
Q |
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| T |
23251533 |
cgtaaactctgcatatacataggttgaatttgaaaaggaatttatttttatagcttttatgtgaattattaaatcactaatcaagcgtaaagtgcatctc |
23251434 |
T |
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| Q |
218 |
a---cttttattatatatgaaagaaaata |
243 |
Q |
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| T |
23251433 |
atcctttttattatatatgaaagaaaata |
23251405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 23247221 - 23247001
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
118 |
Q |
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||||||||||||||||| |||| || |||| ||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23247221 |
gtatcactatggaacttttaaatttaatgtcttttgtttacttttctttttggattgtaggataggaaatgtctatactacaacctttttaattggtagc |
23247122 |
T |
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| Q |
119 |
ataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagc-ttttatgtggattattaaatcactaatcaagcttaaagtgcatc-- |
215 |
Q |
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|||||| ||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||||| || |||||||||||||||| ||| || |||||||| |
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| T |
23247121 |
ataaatactgcatatacataggttaaaattaaaaaggaatttctttttatagctttttatgt-gaatattaaatcactaatcgagcatatagtgcatctc |
23247023 |
T |
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| Q |
216 |
-tgacttttattatatatgaaa |
236 |
Q |
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||||||||||||||||||||| |
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| T |
23247022 |
atgacttttattatatatgaaa |
23247001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 23266167 - 23266061
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23266167 |
gtatcactatggaacttctaaattttctttgtttggtttaactttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
23266068 |
T |
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| Q |
119 |
ataaatt |
125 |
Q |
| |
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||||||| |
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| T |
23266067 |
ataaatt |
23266061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 23283243 - 23283160
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttattttt-ggattgtagaataggaaatgtctatactacaa |
101 |
Q |
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||||| |||||||||||||||| || | | ||||||||| |||| ||||| |||||||||||| | ||||||||||||||||| |
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| T |
23283243 |
gtatccctatggaacttctaaaattgaagagtttggttttgtttttttttttggattgtagaattgaaaatgtctatactacaa |
23283160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 23266056 - 23265982
Alignment:
| Q |
158 |
tttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctgacttttattatatatgaaagaa |
239 |
Q |
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||||| || |||||||||||||| ||| |||||||||||||||| | ||||||| ||||||||||||||||||||| |
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| T |
23266056 |
tttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtg-------cttttattatatatgaaagaa |
23265982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 23289586 - 23289502
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttatt--tttggattgtagaataggaaatgtctatactacaa |
101 |
Q |
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||||| ||||||||||||| ||||| | |||||||||||| |||| || ||||||||||| || | |||||||| |||||||| |
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| T |
23289586 |
gtatcgctatggaacttctgaacttgaagtgtttggtttacttttttttgtttggattgtaaaacggaaaatgtctgtactacaa |
23289502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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