View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1391A-Insertion-1 (Length: 569)

Name: NF1391A-Insertion-1
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1391A-Insertion-1
NF1391A-Insertion-1
[»] chr8 (2 HSPs)
chr8 (65-562)||(25187509-25188001)
chr8 (439-540)||(4282246-4282348)
[»] chr2 (2 HSPs)
chr2 (361-532)||(19250948-19251118)
chr2 (415-516)||(25290643-25290744)
[»] chr3 (3 HSPs)
chr3 (415-542)||(9443534-9443661)
chr3 (414-508)||(744438-744532)
chr3 (415-508)||(748369-748462)
[»] chr6 (1 HSPs)
chr6 (444-542)||(7859317-7859415)
[»] chr5 (1 HSPs)
chr5 (439-542)||(28800938-28801041)
[»] chr4 (1 HSPs)
chr4 (483-543)||(19724282-19724342)
[»] scaffold0596 (1 HSPs)
scaffold0596 (439-516)||(2937-3014)


Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 65 - 562
Target Start/End: Original strand, 25187509 - 25188001
Alignment:
Q  65 tttatgtcttttcttcaaatgttttaattaaaagagaacataaaacttttggtaaaaacttaacgattttgttttttaacaaccaatattattattagaa 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  25187509 tttatgtcttttcttcaaatgttttaattaaaagagaacataaaacttttggtaaaaacttgacgattttgttttttaacagccaatattattattagaa 25187608  T
Q  165 accaaactctcaagttggtttgaaaaaacacaaaacaaaccccaatgcatacacttaaaaagggctggcattacaagaagnnnnnnnncagcacctaaaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         ||||||||||||    
T  25187609 accaaactctcaagttggtttgaaaaaacacaaaacaaaccccaatgcatacactaaaaaagggctggcattacaagaa---aaaaaacagcacctaaaa 25187705  T
Q  265 aacacagcaccaagcaaaacaggcccctgttgtcaaagcagcaaaccgcgcccccaaacagagctgcaaggctagaacaacaacaaactcagcaccaaaa 364  Q
    | |||| ||||||||||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  25187706 agcacatcaccaagcaaaacaggcccctgttgtcaaagcaacaaa---------caaacagagctgcaaggctagaacaacaacaaactcagcaccaaaa 25187796  T
Q  365 accaccacaactgccatgtaactaacagccccaaaaataacaccgaaaggctatctaagtaagcattctcgggtgt-------tccaacaccactcataa 457  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  25187797 accaccacaactgccatgtaacgaacagccccaaaaataacaccgaaaggctatctaagtaagcattctcgggtgttccaacctccaacaccactcataa 25187896  T
Q  458 tacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctcaagaataatattatcca 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25187897 tacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctcaagaataatattatcca 25187996  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 439 - 540
Target Start/End: Complemental strand, 4282348 - 4282246
Alignment:
Q  439 gttccaacaccactcataatacaagcacaatgctatttttaa-cttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctat 537  Q
    |||||||||||||||||||||||| ||    ||||||||| | ||||||||||||||||||||||||||  | ||| ||||| |||||||  ||||| ||    
T  4282348 gttccaacaccactcataatacaaacatgtcgctatttttcagcttactcatactccaataccaagctagaacctttatattctcgaccacatcctccat 4282249  T
Q  538 ctc 540  Q
    |||    
T  4282248 ctc 4282246  T

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Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 361 - 532
Target Start/End: Original strand, 19250948 - 19251118
Alignment:
Q  361 aaaaaccaccacaactgccatgtaactaacagccccaaaaat-aacaccgaaaggctatctaagtaagcattctcgggtgttccaacaccactcataata 459  Q
    ||||||||| ||||| ||| | |||| ||||||||||| ||| |||||||||  ||||||||||||||||||  || | |||| ||||||||| ||||||    
T  19250948 aaaaaccactacaac-gccctctaacaaacagccccaataatgaacaccgaattgctatctaagtaagcattaccgagggttctaacaccacttataata 19251046  T
Q  460 caagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcc 532  Q
    ||| |||| || | |||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  19251047 caaacaca-tgatgttttcaacttactcatactccaaaaccaagataacaccttgatattatcgaccaattcc 19251118  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 415 - 516
Target Start/End: Complemental strand, 25290744 - 25290643
Alignment:
Q  415 ctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttg 514  Q
    ||||||||||||||| || || | |||||||| ||||||||||||||| ||| |  | ||||||||||||||||||||||||||||||||||  ||||||    
T  25290744 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactccaataccaagctagaatcttg 25290645  T
Q  515 at 516  Q
    ||    
T  25290644 at 25290643  T

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Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 415 - 542
Target Start/End: Original strand, 9443534 - 9443661
Alignment:
Q  415 ctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttg 514  Q
    ||||| ||||||||| || || | ||||||||||||||||||| ||||||||   |||||||||| ||||||||||||||||||||||||||  | ||||    
T  9443534 ctatcgaagtaagcactcccgagggttccaacaccactcataagacaagcacgtcgctatttttagcttactcatactccaataccaagctaggaccttg 9443633  T
Q  515 atattatcgaccaattcctctatctcaa 542  Q
    ||||| || ||||||||||| |||||||    
T  9443634 atattctccaccaattcctccatctcaa 9443661  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 508
Target Start/End: Original strand, 744438 - 744532
Alignment:
Q  414 gctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaac 508  Q
    ||||||||| |||| ||||||| | ||||||||||||||| |||||||| ||| || | |||||   | ||||||||| ||||||||||| ||||    
T  744438 gctatctaattaagtattctcgagggttccaacaccactcgtaatacaaacacgatacaattttccgcctactcatacaccaataccaagataac 744532  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 508
Target Start/End: Original strand, 748369 - 748462
Alignment:
Q  415 ctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaac 508  Q
    |||||||| |||| ||||||| | ||||||||||||||| |||||||| ||| || | |||||   | ||||||||  ||||||||||||||||    
T  748369 ctatctaattaagtattctcgagggttccaacaccactcgtaatacaaacacgatacaattttccgcctactcatataccaataccaagctaac 748462  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 542
Target Start/End: Complemental strand, 7859415 - 7859317
Alignment:
Q  444 aacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctcaa 542  Q
    ||||||||||||||||||| |||   |||||| | | |||||||||||||||||||||||| |  | ||||||||| || ||||| |||||||||||||    
T  7859415 aacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaaccttgatattctccaccaaatcctctatctcaa 7859317  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 542
Target Start/End: Complemental strand, 28801041 - 28800938
Alignment:
Q  439 gttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatc 538  Q
    |||||||||||| ||||||||| | ||  |||||||||| |  || ||||||||||||||||||||||  | ||||||||| || ||||| ||||||| |    
T  28801041 gttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaaccttgatattctccaccaaatcctctacc 28800942  T
Q  539 tcaa 542  Q
    ||||    
T  28800941 tcaa 28800938  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 543
Target Start/End: Original strand, 19724282 - 19724342
Alignment:
Q  483 tactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctcaag 543  Q
    ||||||||||||||||||||||||||| ||||||||| || | |||||| |||| ||||||    
T  19724282 tactcatactccaataccaagctaacaccttgatattctcaatcaattcttctacctcaag 19724342  T

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Target: scaffold0596 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 516
Target Start/End: Original strand, 2937 - 3014
Alignment:
Q  439 gttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgat 516  Q
    |||||||||| |||  ||| |||| ||| |||| ||||| |||  ||||||||||||| |||||| ||||||||||||    
T  2937 gttccaacactacttgtaaaacaaacacgatgcaattttcaaccgactcatactccaaaaccaagataacatcttgat 3014  T

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