View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391A-Insertion-11 (Length: 738)
Name: NF1391A-Insertion-11
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391A-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 6683949 - 6684281
Alignment:
| Q |
8 |
agaagcccatcttaaatatgacatatttatctgtgtccgccaacaacgtgaagaagcacaatcattacataaaagattgagctggtgttaagtgtactat |
107 |
Q |
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| T |
6683949 |
agaagcccatcttaaatatgacatatttatctgtgtccgccaacaaggtgaagaagcacagtcattacataaaagattgagctggtgttaagtgtactat |
6684048 |
T |
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| Q |
108 |
tactataaggtacaagatccaaaagaatgcctatatgtccaagatacaaggtttttcgagaaaaggtcccatccttcaatatcatgattgggaaaaaata |
207 |
Q |
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| T |
6684049 |
tactataaggtacaagatccaaaagaatgcctatatgtccaagatacaaggtttttcgagaaaaggtcccatccttcaatatcatgattgggaaaaaata |
6684148 |
T |
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| Q |
208 |
tggtcttagctaaaggagttcaaaccaaacttggtaaaataatgaacaatttgaatagttccacgattaatattagagatcgtgaagtgagaaagtttgt |
307 |
Q |
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| T |
6684149 |
tggtcttagctaaaggagttcaaaccaaacttggtaaaataatgaacaatttgaatagtttcacgattaatattagagatcgtgaagcgagaaagtttgt |
6684248 |
T |
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| Q |
308 |
tgaagaaacacctcaattcgagcaattaattta |
340 |
Q |
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| T |
6684249 |
tgaagaaacacctcaattcgagcaattaattta |
6684281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 390 - 738
Target Start/End: Original strand, 6684331 - 6684683
Alignment:
| Q |
390 |
caatgaaaagataaaacctatcagcttagaccttcttcgttatatatnnnnnnn-gataaaatctatataannnnnnnnnnnnnnnncattggaggtaat |
488 |
Q |
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| T |
6684331 |
caatggaaagataaaacctatcagcttagaccttcttcgttatatataaaaaaaagataaaatctatataattttttctttgtttttcattggaggtaat |
6684430 |
T |
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| Q |
489 |
taactttacttgagatgtatctgctgcactaatggtaaacatctcttctaactgaaattcaaattttaatttatcacat--tatagaagtctaatatttt |
586 |
Q |
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| T |
6684431 |
taactttacttgagatgtatctgc---actaatggtaaacatctcttctaactgaaattcaaattttaatttatcacatattatagaagtctaatatttt |
6684527 |
T |
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| Q |
587 |
gtgctaaacccaatgttagcttcatttaaatatttcttatctacttaatgtggaactcgcaagggttgtcttatctctcacaagtaataataaataa--- |
683 |
Q |
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| T |
6684528 |
ctgctaaacccaacgttagcttcatttaaatatttattatctacttaatgtggaactcacaagggttgtctaatctctcacaagtaataataaataagta |
6684627 |
T |
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| Q |
684 |
-ataaaatgaaaactcctaatatgtgatgttagagatgaggatagtaggatacttc |
738 |
Q |
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| T |
6684628 |
tataaaatgaaaactcctaatatgtgatgttagagataaggatagtaggatacttc |
6684683 |
T |
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