View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1391A-Insertion-12 (Length: 395)

Name: NF1391A-Insertion-12
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1391A-Insertion-12
NF1391A-Insertion-12
[»] chr3 (19 HSPs)
chr3 (229-370)||(24709976-24710117)
chr3 (37-131)||(47186173-47186267)
chr3 (37-131)||(42664671-42664765)
chr3 (37-131)||(31187149-31187243)
chr3 (37-131)||(34029370-34029464)
chr3 (37-128)||(50934501-50934592)
chr3 (37-125)||(33509684-33509772)
chr3 (63-129)||(10018671-10018737)
chr3 (37-130)||(47426349-47426442)
chr3 (37-129)||(44380254-44380346)
chr3 (63-129)||(10179868-10179934)
chr3 (76-128)||(21963073-21963125)
chr3 (39-127)||(39498750-39498838)
chr3 (63-129)||(10123211-10123277)
chr3 (61-127)||(32319468-32319534)
chr3 (70-131)||(42273332-42273393)
chr3 (70-131)||(46489767-46489828)
chr3 (37-81)||(35094596-35094640)
chr3 (83-131)||(53440669-53440717)
[»] chr6 (3 HSPs)
chr6 (37-131)||(34245565-34245659)
chr6 (37-128)||(11113557-11113648)
chr6 (37-130)||(5403955-5404048)
[»] chr5 (17 HSPs)
chr5 (37-131)||(13086751-13086845)
chr5 (37-131)||(38010693-38010787)
chr5 (37-130)||(13015380-13015473)
chr5 (37-131)||(13478124-13478218)
chr5 (37-131)||(29989960-29990054)
chr5 (270-370)||(6173772-6173873)
chr5 (39-128)||(13421091-13421180)
chr5 (37-129)||(19357340-19357432)
chr5 (37-129)||(9827788-9827880)
chr5 (37-129)||(11607613-11607705)
chr5 (37-124)||(33858617-33858704)
chr5 (37-130)||(1826258-1826351)
chr5 (37-85)||(37881185-37881233)
chr5 (37-105)||(10292897-10292965)
chr5 (37-129)||(39570122-39570214)
chr5 (327-360)||(6142575-6142608)
chr5 (70-131)||(35622814-35622875)
[»] chr1 (12 HSPs)
chr1 (270-370)||(7740303-7740403)
chr1 (37-131)||(8809719-8809813)
chr1 (50-131)||(35998250-35998331)
chr1 (37-130)||(29119403-29119496)
chr1 (37-129)||(32676136-32676228)
chr1 (39-129)||(8462129-8462218)
chr1 (37-129)||(2569037-2569129)
chr1 (37-128)||(6223052-6223143)
chr1 (37-129)||(25161309-25161401)
chr1 (83-128)||(5581281-5581326)
chr1 (70-131)||(18056136-18056197)
chr1 (96-128)||(16679836-16679868)
[»] chr8 (7 HSPs)
chr8 (37-131)||(1514801-1514895)
chr8 (37-122)||(18168392-18168477)
chr8 (37-122)||(18631949-18632034)
chr8 (37-130)||(24337909-24338002)
chr8 (39-129)||(41179644-41179734)
chr8 (327-360)||(11910704-11910737)
chr8 (327-360)||(11940930-11940963)
[»] chr4 (15 HSPs)
chr4 (37-131)||(52012776-52012870)
chr4 (39-130)||(9799444-9799535)
chr4 (37-128)||(49999667-49999758)
chr4 (37-105)||(46719954-46720022)
chr4 (37-130)||(12473703-12473796)
chr4 (37-130)||(12528112-12528205)
chr4 (37-128)||(33249453-33249544)
chr4 (37-131)||(47943156-47943251)
chr4 (52-129)||(55590482-55590559)
chr4 (37-129)||(22343337-22343429)
chr4 (37-129)||(35869650-35869742)
chr4 (37-128)||(52910128-52910219)
chr4 (37-129)||(21260794-21260886)
chr4 (70-131)||(28092855-28092916)
chr4 (70-131)||(54277634-54277695)
[»] chr7 (4 HSPs)
chr7 (37-130)||(48250153-48250246)
chr7 (37-129)||(35341536-35341628)
chr7 (37-129)||(48072389-48072479)
chr7 (65-130)||(40856391-40856456)
[»] scaffold0032 (1 HSPs)
scaffold0032 (37-129)||(34194-34286)
[»] chr2 (8 HSPs)
chr2 (37-129)||(34392160-34392252)
chr2 (37-124)||(14565932-14566019)
chr2 (37-126)||(7381695-7381784)
chr2 (37-129)||(21603959-21604051)
chr2 (37-115)||(23863882-23863958)
chr2 (39-129)||(37358002-37358092)
chr2 (57-125)||(3668315-3668383)
chr2 (37-93)||(4779621-4779677)
[»] scaffold0263 (1 HSPs)
scaffold0263 (37-128)||(23178-23263)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 370
Target Start/End: Original strand, 24709976 - 24710117
Alignment:
Q  229 cagcaatactaaatagcgcgacatgtatatgcacgaattgcgcacaaattcataaaacaagtgctctttgtgttttttaagactgcacatcccacatcta 328  Q
    ||||||| |||||||||||||||| || | |||||||||| |||  ||||| |||||||| |||||| ||  ||||| ||||||||||||||||||||||    
T  24709976 cagcaatgctaaatagcgcgacatatacacgcacgaattgagcatgaattcttaaaacaactgctctatgattttttgaagactgcacatcccacatcta 24710075  T
Q  329 aaatcaaaatatcaaacaaaaatatagtatccaccgatccac 370  Q
    |||||||||||||||||||||| ||| ||||||||| |||||    
T  24710076 aaatcaaaatatcaaacaaaaacataatatccaccgctccac 24710117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 47186267 - 47186173
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||  |||||| |||||||||| |||||||||||||||||||||||||    
T  47186267 tcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtggtg 47186173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 42664765 - 42664671
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||    
T  42664765 tcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtggtg 42664671  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 31187149 - 31187243
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||  ||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||    
T  31187149 tcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtggtg 31187243  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 34029370 - 34029464
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||  ||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  34029370 tcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtggtg 34029464  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 50934592 - 50934501
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    |||||||| | ||||||||| ||||||||||| |||||||||||| ||||  |||||  ||||| |||| ||||||||||||||||||||||    
T  50934592 tcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 33509772 - 33509684
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaa 125  Q
    |||||||||| || |||||| ||| ||||||| |||||||||||| |||| ||||||  |||||  |||||||||||||||||||||||    
T  33509772 tcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 10018671 - 10018737
Alignment:
Q  63 ttggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||| |||||||||| ||||||| |||||  |||||||||| |||| ||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtgg 10018737  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 47426442 - 47426349
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||||| || |||||| |||||||| || ||| |||||||| ||||  |||||  |||||  ||| ||||||||||||||||||||||||    
T  47426442 tcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatggtatatactattggtaccttaatggtacacaagtggt 47426349  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 44380346 - 44380254
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||| ||||||||| ||| |||| || ||| |||||| | |||| |||||   ||||| |||| |||||||||||||||||||||||    
T  44380346 tcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtgg 44380254  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 10179868 - 10179934
Alignment:
Q  63 ttggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||| |||||||||||| ||||| |||||  ||||| |||| |||| ||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 10179934  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 21963073 - 21963125
Alignment:
Q  76 cactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    ||||||||||| ||||||| ||||||||||  ||||||||||||||| |||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtg 21963125  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 39498750 - 39498838
Alignment:
Q  39 aaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagt 127  Q
    ||||||| ||||||||||||||||| | || ||| |||||| | ||||| ||||   ||||| |||| |||| ||||||||||||||||    
T  39498750 aaataaaatatttataaaataacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 10123211 - 10123277
Alignment:
Q  63 ttggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||| |||||||||| ||||||| || ||  ||||||||||  ||| ||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtgg 10123277  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  61 cattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagt 127  Q
    |||| ||| |||||||||||| ||||  |||||  ||||| |||| |||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 42273393 - 42273332
Alignment:
Q  70 gtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||| | ||||| |||||| |||||||||| ||| |  ||||||||||||||||||    
T  42273393 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtg 42273332  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 46489767 - 46489828
Alignment:
Q  70 gtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||| | ||||| |||||| |||||||||| ||| |  ||||||||||||||||||    
T  46489767 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtg 46489828  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 35094640 - 35094596
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactct 81  Q
    ||||||||| |||||||||| ||||||||||| |||||| |||||    
T  35094640 tcaaataaaatatttataaagtaacattggtaggtggcatactct 35094596  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 53440669 - 53440717
Alignment:
Q  83 attgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||||| |||||||||| ||| | |||||||||||||| ||||    
T  53440669 attgatcaatgttatataacattggtatcctaatggtacacaagaggtg 53440717  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 34245659 - 34245565
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  34245659 tcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtggtg 34245565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 11113648 - 11113557
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    |||||||||| | ||| ||| ||||||| ||| ||| ||||||||||||  ||||||| ||||| |||| ||||||||||||||||||||||    
T  11113648 tcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 5403955 - 5404048
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||||  || |||||| ||||||||||| |||||| ||||| | ||| ||||   ||||| |||||||||||||||||||||||||||||    
T  5403955 tcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtggt 5404048  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 13086845 - 13086751
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  13086845 tcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtg 13086751  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 38010693 - 38010787
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||  |||||| |||||||||| |||||||||||||||||||||||||    
T  38010693 tcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtggtg 38010787  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 13015473 - 13015380
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  13015473 tcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggt 13015380  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 13478124 - 13478218
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    ||||||||| |||||||||| ||||| ||||| ||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||||||||    
T  13478124 tcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtggtg 13478218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 29990054 - 29989960
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||  ||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||  ||||||||||||||||||||||||    
T  29990054 tcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtggtg 29989960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 6173873 - 6173772
Alignment:
Q  270 gcacaaattcataaaacaagtgctctt-tgtgttttttaagactgcacatcccacatctaaaatcaaaatatcaaacaaaaatatagtatccaccgatcc 368  Q
    |||| ||||| ||||||||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||| |||    
T  6173873 gcacgaattcttaaaacaagtgcttttatgtttttttgaagactgcacatcccacatctaaaatcaaaatatctaactaaaacataatatccaccgctcc 6173774  T
Q  369 ac 370  Q
    ||    
T  6173773 ac 6173772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 13421091 - 13421180
Alignment:
Q  39 aaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    |||||||| ||||||||| |||||||| ||  ||  |||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  13421091 aaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacacaagtg 13421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 19357340 - 19357432
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||| ||||  |||||  ||||| |||| ||||| |||||||||||||||||    
T  19357340 tcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtgg 19357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 9827880 - 9827788
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    ||||||||| |||||||||| ||| ||||||| |||| ||||||| |||||  || |  ||||| |||| |||||||||||||||||||||||    
T  9827880 tcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtgg 9827788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 11607613 - 11607705
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||  ||||||||| ||| ||||||| |||||||||| | |||| ||||||  ||||| |||| |||||||||||||| ||||||||    
T  11607613 tcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtgg 11607705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 33858617 - 33858704
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacaca 124  Q
    |||||||||  ||||||||| ||||||||||| |||||||||| | |||| ||||||  |||||  ||| ||||||||||||||||||    
T  33858617 tcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 1826351 - 1826258
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||||| || || ||| ||| ||||||| ||| |||||||| ||||| |||||  ||||| |||| |||| |||||||||||||||||||    
T  1826351 tcaaataaagcatctacaaagtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggt 1826258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 37881233 - 37881185
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttatt 85  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  37881233 tcaaataaaatatttataaagtaacattggtatgtggcacactcttatt 37881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 10292965 - 10292897
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacatt 105  Q
    |||||||||  | ||| ||||||||||| |||||||||||| ||||||||  |||||| ||||||||||    
T  10292965 tcaaataaaacacttacaaaataacattagtacgtggcacattcttattggccaatgttatataacatt 10292897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 39570122 - 39570214
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||  ||||||||| ||||||||||| ||| |||||||| ||||  |||||  ||||| ||||  ||| |||||| |||||||||||    
T  39570122 tcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatactttaatgatacacaagtgg 39570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 6142575 - 6142608
Alignment:
Q  327 taaaatcaaaatatcaaacaaaaatatagtatcc 360  Q
    |||||||||||||||||||||||||||| |||||    
T  6142575 taaaatcaaaatatcaaacaaaaatataatatcc 6142608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 35622875 - 35622814
Alignment:
Q  70 gtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||| | ||||| |||||| |||||||||| ||| |  ||||||||||||||||||    
T  35622875 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtg 35622814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 7740403 - 7740303
Alignment:
Q  270 gcacaaattcataaaacaagtgctctttgtgttttttaagactgcacatcccacatctaaaatcaaaatatcaaacaaaaatatagtatccaccgatcca 369  Q
    |||| ||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  7740403 gcacgaattcttaaaacaagtgctctatgttttttttaagactgcacatcccacatctaaaaacaaaatatcaaacaaaaacatagtatccaccgctcca 7740304  T
Q  370 c 370  Q
    |    
T  7740303 c 7740303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 8809719 - 8809813
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  8809719 tcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtg 8809813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 35998331 - 35998250
Alignment:
Q  50 ttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||||||||| || |||||||||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||    
T  35998331 ttataaaataacattgatatgtggcacactcttattaatcaatgttatataacattggtaccttaatggtatacaagtggtg 35998250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 29119403 - 29119496
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||||| || |||||| ||||| || || |||||||||||| ||||  |||||  ||||| |||| ||||||||||||||||||||||||    
T  29119403 tcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggt 29119496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 32676228 - 32676136
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||| ||||||||| ||||||||||| ||||  || ||| ||||  |||||  ||||| |||| |||||||||||||||||||||||    
T  32676228 tcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 32676136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 8462218 - 8462129
Alignment:
Q  39 aaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||  ||||||||||||||||||||| |||||||||| | |||||||||||  ||||| |||| |||| |||||  |||||||||||    
T  8462218 aaataaaacatttataaaataacattggtaggtggcacactataattgatcaatgatatataccattggtactttaat-atacacaagtgg 8462129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 2569129 - 2569037
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||| |||  |||  ||||||||||| |||||||||||| ||||   ||||  ||||| |||| |||||||||||||||||||||||    
T  2569129 tcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 6223143 - 6223052
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    ||||||||| || |||||||||||||||| ||  || |||||  | |||||||||||  ||||||||||  ||| |||||||||||||||||    
T  6223143 tcaaataaaatacttataaaataacattgatatatgacacaccttaattgatcaatgatatataacattgatactttaatggtacacaagtg 6223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 25161401 - 25161309
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||  ||||||||| |||||||| || |||||||||| | |||| ||||||  ||||| ||||   || ||||||||||||||||||    
T  25161401 tcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtgg 25161309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 5581326 - 5581281
Alignment:
Q  83 attgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    |||| ||||||| |||||||||||||| | ||||||||||||||||    
T  5581326 attggtcaatgttatataacattagtatcctaatggtacacaagtg 5581281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 18056136 - 18056197
Alignment:
Q  70 gtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||| | |||| ||||| | |||||||||| |||  ||||||||||||||||||||    
T  18056136 gtggcacactttcattggtcaatattatataacattggtagtttaatggtacacaagtggtg 18056197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 16679836 - 16679868
Alignment:
Q  96 atataacattagtaccttaatggtacacaagtg 128  Q
    |||||||||| ||||||||||||||||||||||    
T  16679836 atataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 1514895 - 1514801
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||  ||||||||| ||||||||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  1514895 tcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtggtg 1514801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 18168477 - 18168392
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtaca 122  Q
    |||||||||||||||||||| ||| ||||||| |||| ||||||| |||||||||||  ||||| |||| ||||||||||||||||    
T  18168477 tcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 18632034 - 18631949
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtaca 122  Q
    |||||||||||||||||||| ||| ||||||| |||| ||||||| |||||||||||  ||||| |||| ||||||||||||||||    
T  18632034 tcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 24337909 - 24338002
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||||| || |||||| |||||||||||  ||||||||||| ||||| | |||  ||||| ||||  ||||||||| |||||||||||||    
T  24337909 tcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtggt 24338002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 41179644 - 41179734
Alignment:
Q  39 aaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||  ||||||||| |||||| |||| ||| |||||| | ||||  |||||  ||||| |||| |||||||||||||||||||||||    
T  41179644 aaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtgg 41179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 11910704 - 11910737
Alignment:
Q  327 taaaatcaaaatatcaaacaaaaatatagtatcc 360  Q
    |||||||||||||||||||||||||||| |||||    
T  11910704 taaaatcaaaatatcaaacaaaaatataatatcc 11910737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 11940963 - 11940930
Alignment:
Q  327 taaaatcaaaatatcaaacaaaaatatagtatcc 360  Q
    |||||||||||||||||||||||||||| |||||    
T  11940963 taaaatcaaaatatcaaacaaaaatataatatcc 11940930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 52012870 - 52012776
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||  ||||||||| ||||||||||| |||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  52012870 tcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtggtg 52012776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 9799444 - 9799535
Alignment:
Q  39 aaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||  ||||||||| ||||||||||| |||||||| |||| ||| ||||||| |||||||||| |||||||||||||| |||||||||    
T  9799444 aaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtggt 9799535  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 49999667 - 49999758
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| ||||| |||||  | |||||||||||| ||| ||||||||||||||    
T  49999667 tcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 46720022 - 46719954
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacatt 105  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| ||||||||||    
T  46720022 tcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacatt 46719954  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 12473796 - 12473703
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||||| || |||||| ||||||||||| |||||||||||| ||||  |||||  ||||| |||| |||||||||||||| |||||||||    
T  12473796 tcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtggt 12473703  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 12528205 - 12528112
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||||| || |||||| ||||||||||| |||||||||||| ||||  |||||  ||||| |||| |||||||||||||| |||||||||    
T  12528205 tcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtggt 12528112  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 33249453 - 33249544
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    |||||||||| ||||||||| ||||||||||| ||| |||||||| ||||  ||||   ||||| |||| ||||||||||||||||||||||    
T  33249453 tcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 47943251 - 47943156
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatc-aatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    ||||||||| |||||||||||||| ||||||| |||||||| | |||||| || ||| | |||||||||| |||  ||||||||||||||||||||    
T  47943251 tcaaataaaatatttataaaataatattggtatgtggcacatttttattggtcaaatattatataacattggtattttaatggtacacaagtggtg 47943156  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 55590559 - 55590482
Alignment:
Q  52 ataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    ||||| ||||||||||| ||| |||||| | |||||||||||  ||||| |||| |||||||||||||||||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtgg 55590482  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 22343429 - 22343337
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||| ||||||||| |||||||| ||  || |||||||| |||| ||||||  ||||| ||||  ||||||||||||||||||||||    
T  22343429 tcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtgg 22343337  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 35869650 - 35869742
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||  ||||||| | ||||||||||| |||||||| | | |||| ||||||  ||||| |||| |||||||||||||||||||||||    
T  35869650 tcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 35869742  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 52910128 - 52910219
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||| | ||||  |||||  |||||||||| ||||| | ||||||||||||||    
T  52910128 tcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 21260886 - 21260794
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||  ||||||||| ||||||||||| ||| |||||||| ||||  |||||  ||||| |||| |||||||||||||| | ||||||    
T  21260886 tcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgatatatatcattggtaccttaatggtatataagtgg 21260794  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 28092855 - 28092916
Alignment:
Q  70 gtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||| | ||||| |||||| |||||||||| ||| |  ||||||||||||||||||    
T  28092855 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtg 28092916  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 54277634 - 54277695
Alignment:
Q  70 gtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggtg 131  Q
    |||||||||| | ||||| |||||| |||||||||| ||| |  ||||||||||||||||||    
T  54277634 gtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtg 54277695  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 48250246 - 48250153
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||||||||| || |||||| ||||||||||| |||||||||||| ||||| |||||  ||||| |||| ||||||||||||||||||||||||    
T  48250246 tcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtggt 48250153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 35341628 - 35341536
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||  ||||||||| ||||||||||| |||||||||| | |||| ||||||  ||||| |||| |||||||||||||||||||||||    
T  35341628 tcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtgg 35341536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 48072479 - 48072389
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    ||||||||| |||||||||||||||||||  | |||||||||||| |||||||||||   ||||  ||| |||||||||| ||||||||||||    
T  48072479 tcaaataaaatatttataaaataacattgaaatgtggcacactctaattgatcaatg--gtatactattggtaccttaatagtacacaagtgg 48072389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 40856456 - 40856391
Alignment:
Q  65 ggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtggt 130  Q
    |||| ||| |||||||| ||||||||||   ||||| |||||||||||||||| |||| |||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtggt 40856391  T

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Target: scaffold0032 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 34286 - 34194
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    ||||||||| |||||||||| ||| ||||||| |||||||||||| ||||  ||||   ||||| |||| |||||||||||||||||||||||    
T  34286 tcaaataaaatatttataaagtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtgg 34194  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 34392160 - 34392252
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||| ||||  |||||  ||||| |||| |||||| ||||||||||||||||    
T  34392160 tcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtgg 34392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 14565932 - 14566019
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacaca 124  Q
    |||||| ||||| ||||||||||| ||||||| || |||||||||  ||||||||||  |||||||||| |||||||| |||||||||    
T  14565932 tcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtaccttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 7381784 - 7381695
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaag 126  Q
    |||||||||| ||||||||| |||||||||||  ||||||||||| ||||  ||||   ||||| |||| ||||||||||||||||||||    
T  7381784 tcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 21604051 - 21603959
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||||  ||||||||| ||||||||||| |||  ||||| | |||| ||||||  ||||| |||| |||||||||||||||||||||||    
T  21604051 tcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 21603959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 23863882 - 23863958
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaa 115  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||| ||||| |||  ||||||| |||| |||||||||    
T  23863882 tcaaataaagcatttataaagtaacattggtaggtggcacactctaattgaccaa--taatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 37358002 - 37358092
Alignment:
Q  39 aaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtgg 129  Q
    |||||||| ||||||||| |||||||| || ||| |||||||| |||  ||||||  ||||| |||| ||||||||||| |||||||||||    
T  37358002 aaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtgg 37358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 3668315 - 3668383
Alignment:
Q  57 ataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaa 125  Q
    |||| |||| || ||| ||||||||||   |||||||| |||||||||| ||||||||||| |||||||    
T  3668315 ataatattgatatgtgacacactcttaccaatcaatgttatataacattggtaccttaatgatacacaa 3668383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 4779677 - 4779621
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatg 93  Q
    |||||||||||||||||||| |||||||| || | |||||||| | | |||||||||    
T  4779677 tcaaataaagtatttataaagtaacattgttaggcggcacactataagtgatcaatg 4779621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 23178 - 23263
Alignment:
Q  37 tcaaataaagtatttataaaataacattggtacgtggcacactcttattgatcaatgtaatataacattagtaccttaatggtacacaagtg 128  Q
    ||||||||| |||||||||| ||| ||||||| |||||||||||| ||||  |||||  |||||    | ||||||||||||||||||||||    
T  23178 tcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatg--atata----tcgtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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