View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1391A-Insertion-13 (Length: 194)
Name: NF1391A-Insertion-13
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391A-Insertion-13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 24566719 - 24566815
Alignment:
| Q |
81 |
tctctctctcgtggatggtttctgcattgtcgccctatttgtggaatttgtttagaaaagaggnnnnnnnnngtaaacaaaatcttgagccagactg |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
24566719 |
tctctctctcgtggatggtttctgcattgtcgccctatttgtggaatttgtttagaaaataggaaaaaaaaagtaaacaaaatcttgagccagactg |
24566815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 44339976 - 44340029
Alignment:
| Q |
85 |
tctctcgtggatggtttctgcattgtcgccctatttgtggaatttgtttagaaa |
138 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
44339976 |
tctctcatggatggtttctgcatcgtccccctatttctggaatttgtttagaaa |
44340029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University