View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1391A-Insertion-16 (Length: 216)

Name: NF1391A-Insertion-16
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1391A-Insertion-16
NF1391A-Insertion-16
[»] chr8 (13 HSPs)
chr8 (90-216)||(20209234-20209364)
chr8 (90-216)||(20228942-20229072)
chr8 (105-189)||(6220451-6220539)
chr8 (101-189)||(41151382-41151474)
chr8 (108-189)||(22813101-22813177)
chr8 (127-185)||(41151679-41151741)
chr8 (124-189)||(24909672-24909741)
chr8 (105-180)||(20209537-20209616)
chr8 (105-180)||(20229245-20229324)
chr8 (155-189)||(27127969-27128003)
chr8 (155-189)||(36053055-36053089)
chr8 (111-189)||(9399803-9399885)
chr8 (127-189)||(41151614-41151680)
[»] chr7 (15 HSPs)
chr7 (90-216)||(44293746-44293876)
chr7 (98-189)||(27280877-27280972)
chr7 (124-189)||(6694738-6694807)
chr7 (124-189)||(31453050-31453119)
chr7 (126-189)||(3198273-3198340)
chr7 (155-189)||(4048237-4048271)
chr7 (103-189)||(42312738-42312828)
chr7 (127-189)||(11975451-11975516)
chr7 (155-189)||(29019343-29019377)
chr7 (155-189)||(30869668-30869702)
chr7 (105-180)||(44294049-44294128)
chr7 (103-189)||(41666352-41666442)
chr7 (124-189)||(27576599-27576668)
chr7 (124-189)||(29710320-29710389)
chr7 (155-187)||(42313061-42313093)
[»] chr6 (12 HSPs)
chr6 (103-189)||(10356240-10356330)
chr6 (124-189)||(21598654-21598723)
chr6 (99-189)||(35225373-35225467)
chr6 (124-189)||(9982938-9983007)
chr6 (155-189)||(13273274-13273308)
chr6 (103-189)||(17136823-17136913)
chr6 (127-189)||(17136907-17136973)
chr6 (123-189)||(35225457-35225527)
chr6 (126-189)||(13273130-13273194)
chr6 (124-189)||(21598505-21598574)
chr6 (124-189)||(21598714-21598783)
chr6 (124-189)||(24059725-24059794)
[»] chr4 (13 HSPs)
chr4 (104-189)||(7246292-7246381)
chr4 (124-189)||(45038384-45038453)
chr4 (99-189)||(2469874-2469968)
chr4 (124-178)||(40395159-40395217)
chr4 (103-189)||(41083033-41083123)
chr4 (124-178)||(50290183-50290239)
chr4 (127-189)||(50290406-50290472)
chr4 (126-189)||(24684256-24684321)
chr4 (103-189)||(40147230-40147320)
chr4 (155-189)||(51950565-51950599)
chr4 (127-189)||(2787950-2788014)
chr4 (124-189)||(7246052-7246121)
chr4 (124-189)||(41083114-41083183)
[»] chr2 (5 HSPs)
chr2 (104-187)||(33847703-33847790)
chr2 (103-189)||(25895184-25895274)
chr2 (124-189)||(36217211-36217278)
chr2 (124-188)||(29379902-29379970)
chr2 (124-189)||(25894965-25895034)
[»] scaffold0002 (2 HSPs)
scaffold0002 (101-177)||(12028-12106)
scaffold0002 (125-189)||(12110-12177)
[»] chr5 (19 HSPs)
chr5 (125-189)||(23662147-23662215)
chr5 (102-189)||(17400815-17400906)
chr5 (123-189)||(1996201-1996271)
chr5 (155-187)||(5746130-5746162)
chr5 (124-189)||(16327158-16327227)
chr5 (99-189)||(25456251-25456344)
chr5 (127-187)||(32361231-32361295)
chr5 (155-185)||(4943112-4943142)
chr5 (155-185)||(4943234-4943264)
chr5 (155-189)||(7209883-7209917)
chr5 (127-189)||(14604072-14604134)
chr5 (155-189)||(20928084-20928118)
chr5 (155-189)||(28559330-28559364)
chr5 (155-189)||(32361203-32361237)
chr5 (155-188)||(14604275-14604308)
chr5 (127-189)||(35813566-35813632)
chr5 (124-189)||(25456335-25456404)
chr5 (126-189)||(25456543-25456609)
chr5 (157-189)||(28022216-28022248)
[»] scaffold0018 (2 HSPs)
scaffold0018 (124-189)||(161404-161473)
scaffold0018 (155-187)||(161675-161707)
[»] chr3 (9 HSPs)
chr3 (124-189)||(47069528-47069597)
chr3 (128-186)||(30955017-30955078)
chr3 (128-186)||(30970829-30970890)
chr3 (155-189)||(14964924-14964958)
chr3 (99-148)||(27657109-27657158)
chr3 (124-189)||(252106-252175)
chr3 (124-189)||(26976504-26976573)
chr3 (124-189)||(28814066-28814135)
chr3 (124-189)||(36667288-36667357)
[»] chr1 (8 HSPs)
chr1 (124-189)||(7489959-7490028)
chr1 (127-175)||(38698916-38698964)
chr1 (127-189)||(1173075-1173139)
chr1 (124-187)||(40892569-40892636)
chr1 (99-178)||(52913006-52913089)
chr1 (155-189)||(52913174-52913208)
chr1 (156-189)||(18981086-18981119)
chr1 (99-189)||(26879669-26879763)
[»] scaffold0571 (1 HSPs)
scaffold0571 (101-187)||(9007-9093)
[»] scaffold0279 (1 HSPs)
scaffold0279 (124-189)||(1203-1272)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 20209234 - 20209364
Alignment:
Q  90 cccaaaattaaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20209234 cccaaaattaaaataggttaaattacactagagatcctttaagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaagt 20209333  T
Q  190 a----gtaatagattggttctttaagttatt 216  Q
    |    |||| |||||||||||||||||||||    
T  20209334 agtctgtaacagattggttctttaagttatt 20209364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 20228942 - 20229072
Alignment:
Q  90 cccaaaattaaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20228942 cccaaaattaaaataggttaaattacactagagatcctttaagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaagt 20229041  T
Q  190 a----gtaatagattggttctttaagttatt 216  Q
    |    |||| |||||||||||||||||||||    
T  20229042 agtctgtaacagattggttctttaagttatt 20229072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 6220539 - 6220451
Alignment:
Q  105 ggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||| |||| || ||||||||||||| ||||||||||||||| |    |||||||||||| ||||||||||||||||||||||    
T  6220539 ggttaaattatactatatgtcctttaagtttgaggtttgtaacaaattggttctttaagttatttttgtcacacataagttctttaagt 6220451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 41151382 - 41151474
Alignment:
Q  101 aataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||||||| | |  ||||||||||||| | ||||||||| ||| ||    |||||||||||| |||||||||||| ||||||||    
T  41151382 aataggttaaattacaccataggtcctttaagtttgagttttgtaacatattggtcctttaagttattttgatcacacataagtcctttaagt 41151474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 22813101 - 22813177
Alignment:
Q  108 taaattacactagatatcctttaagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||| | |||||||||||||| ||||||||||| |     |||||||||||| ||||||||||||  |||||||    
T  22813101 taaattacactaaaaatcctttaagtttgaggtttgtaacata-----taagttattttgatcacacataagtcatttaagt 22813177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 41151741 - 41151679
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttcttt 185  Q
    |||||||||| ||||||||||| ||||||    ||||||||||||||||||||||||| ||||    
T  41151741 tttaagtttgaggtttgtaacagattagtcctttaagttattttggtcacacataagtccttt 41151679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 24909741 - 24909672
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| | ||||||||||||| ||    |||||||||||| |||||||||||| ||||||||    
T  24909741 tcctttaagtttgagatttgtaacaaattggtcctttaagttattttgatcacacataagtcctttaagt 24909672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 20209616 - 20209537
Alignment:
Q  105 ggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagt 180  Q
    ||||||||||||| |  | |||||||| |||| ||||||||||| |||||    |||| |||||||||||||||||||||    
T  20209616 ggttaaattacaccacgtgtcctttaaatttgaggtttgtaacatattagtcctttaaattattttggtcacacataagt 20209537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 20229324 - 20229245
Alignment:
Q  105 ggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagt 180  Q
    ||||||||||||| |  | |||||||| |||| ||||||||||| |||||    |||| |||||||||||||||||||||    
T  20229324 ggttaaattacaccacgtgtcctttaaatttgaggtttgtaacatattagtcctttaaattattttggtcacacataagt 20229245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 27127969 - 27128003
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  27127969 ttaagttattttggtcacacataagtcctttaagt 27128003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 36053089 - 36053055
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||| ||||||||||||||||||||||    
T  36053089 ttaagttattttagtcacacataagttctttaagt 36053055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 9399803 - 9399885
Alignment:
Q  111 attacactagatatcctttaagtttgtggtttgtaacaaattagtt----aagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||   ||||||||||||| ||||||||||| ||| |||    |||||| ||||||||||| ||||| ||||||||    
T  9399803 attacactaggggtcctttaagtttgaggtttgtaacatattggttctttaagttactttggtcacacgtaagtcctttaagt 9399885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 41151680 - 41151614
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||| ||||||||||||| ||| ||    |||||| |||||||||||||||||| ||||||||    
T  41151680 tttaagttcgtggtttgtaacagattggtcctttaagttcttttggtcacacataagtcctttaagt 41151614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 44293746 - 44293876
Alignment:
Q  90 cccaaaattaaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44293746 cccaaaattaaaataggttaaattacactagagatcctttaagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaagt 44293845  T
Q  190 a----gtaatagattggttctttaagttatt 216  Q
    |    |||| |||||||||||||||||||||    
T  44293846 agtctgtaacagattggttctttaagttatt 44293876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 27280972 - 27280877
Alignment:
Q  98 taaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaatt----agttaagttattttggtcacacataagttctttaagt 189  Q
    |||| |||||||||||||||||||  ||||||||||||| |||||||||||  ||      |||||||||||||||||||||||||| ||||||||    
T  27280972 taaattaggttaaattacactagaggtcctttaagtttgaggtttgtaacagcttgaccctttaagttattttggtcacacataagtactttaagt 27280877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 6694807 - 6694738
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| ||| ||    ||||||||||||||||||||||||| ||||||||    
T  6694807 tcctttaagtttgaggtttgtaacatattggtcctttaagttattttggtcacacataagtcctttaagt 6694738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 31453119 - 31453050
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagtta----agttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| ||||||||    ||||||||| ||||||||||||| ||||||||    
T  31453119 tcctttaagtttgaggtttgtaacagattagttatttaagttatttttgtcacacataagtcctttaagt 31453050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 3198273 - 3198340
Alignment:
Q  126 ctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||| ||||||||||||||| ||    ||||||||||||||| ||||||||||||| ||||    
T  3198273 ctttaagtttgaggtttgtaacaaattggtcttttaagttattttggtcccacataagttcttaaagt 3198340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 4048237 - 4048271
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||||||||||||    
T  4048237 ttaagttattttggtcacacataagttctttaagt 4048271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 42312738 - 42312828
Alignment:
Q  103 taggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||| ||||||||||  ||  ||||||||||||| ||||||||| | ||| ||    ||||||||||||||||||||||||| ||||||||    
T  42312738 taggctaaattacacctgaggtcctttaagtttgaggtttgtaatatattggtcatttaagttattttggtcacacataagtcctttaagt 42312828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 11975451 - 11975516
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagtt---aagttattttggtcacacataagttctttaagt 189  Q
    |||||||||| ||||||||| |||||||||   |||||||||| | ||||||||||| ||||||||    
T  11975451 tttaagtttgaggtttgtaataaattagtttttaagttatttttgacacacataagtcctttaagt 11975516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 29019343 - 29019377
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  29019343 ttaagttattttggtcacacataagtcctttaagt 29019377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 30869702 - 30869668
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||||||| |||||||||||||||||    
T  30869702 ttaagttattttggtcatacataagttctttaagt 30869668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 44294128 - 44294049
Alignment:
Q  105 ggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagt 180  Q
    ||||||||||||| |  | |||||||| |||| ||||||||||| |||||    |||| |||||||||||||||||||||    
T  44294128 ggttaaattacaccacgtgtcctttaaatttgaggtttgtaacatattagtcctttaaattattttggtcacacataagt 44294049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 41666442 - 41666352
Alignment:
Q  103 taggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagttctttaagt 189  Q
    |||| ||||||||||| ||  ||||||||||||| ||||||||||| ||| |    ||||||||||| | |||||||||||| ||| ||||    
T  41666442 taggataaattacactcgaggtcctttaagtttgaggtttgtaacagatttgtcccttaagttatttcgatcacacataagtccttaaagt 41666352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 27576668 - 27576599
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||  |||||||||| ||| ||    |||||||||||||||||||||||||  |||||||    
T  27576668 tcctttaagtttgacgtttgtaacagattggtcctttaagttattttggtcacacataagtcatttaagt 27576599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 29710320 - 29710389
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaatta----gttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||  |||||||||| ||||     ||||||||||||||||||| |||||| ||||||||    
T  29710320 tcctttaagtttgacgtttgtaacagattaatcctttaagttattttggtcacatataagtcctttaagt 29710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 42313093 - 42313061
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaa 187  Q
    |||||||||||||||||||||||||| ||||||    
T  42313093 ttaagttattttggtcacacataagtcctttaa 42313061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 10356240 - 10356330
Alignment:
Q  103 taggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||||||||   ||||||||||||| |||||||||||||||||    |||| ||||||||||||||||||||| ||||||||    
T  10356240 taggttaaattacactaggggtcctttaagtttgaggtttgtaacaaattagtcctttaaattattttggtcacacataagtcctttaagt 10356330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 21598723 - 21598654
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||||||||||||||| ||| ||    ||||||||||||||||||||||||| ||||||||    
T  21598723 tcctttaagtttgtggtttgtaacatattggtcctttaagttattttggtcacacataagtcctttaagt 21598654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 35225373 - 35225467
Alignment:
Q  99 aaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||| ||| |||||||||||   ||||||||||||| ||||||||||||||| |    ||||||||||||||||| |||||| | ||||||||    
T  35225373 aaaataagtttaattacactaggggtcctttaagtttgaggtttgtaacaaattggtcctttaagttattttggtcatacataaatcctttaagt 35225467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 9983007 - 9982938
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| || ||||||||||||  |    ||||||||||||||||||||||||| ||||||||    
T  9983007 tcctttaagtttgaggattgtaacaaattgatcctttaagttattttggtcacacataagtcctttaagt 9982938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 13273308 - 13273274
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||| ||||||||||||||||||||||    
T  13273308 ttaagttatttttgtcacacataagttctttaagt 13273274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 17136823 - 17136913
Alignment:
Q  103 taggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||| |||||||||| |||  |||||||| |||| ||||||||| | ||||||    ||||||||||||||| |||||||||  |||||||    
T  17136823 taggctaaattacaccagaggtcctttaaatttgaggtttgtaatagattagtcctttaagttattttggtctcacataagtcatttaagt 17136913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 17136907 - 17136973
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagtt----aagttattttggtcacacataagttctttaagt 189  Q
    |||||||||| ||||||||||| |||| ||    ||||||||||||||||||||||||  |||||||    
T  17136907 tttaagtttgaggtttgtaacagattaattctttaagttattttggtcacacataagtcttttaagt 17136973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 35225457 - 35225527
Alignment:
Q  123 atcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||  ||||||||||| ||| ||    ||||||||| || |||||||||||||||||||||    
T  35225457 atcctttaagtttaaggtttgtaacagattggtcctttaagttattctgatcacacataagttctttaagt 35225527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 13273130 - 13273194
Alignment:
Q  126 ctttaagtttgtggtttgtaacaaatt-agttaagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||| ||||| ||||| ||| | || ||||||||||||| |||||||||| |||||||    
T  13273130 ctttaagtttgaggtttataacagattgattttagttattttggtcccacataagttatttaagt 13273194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 21598505 - 21598574
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| ||| ||    |||||||||||| || ||||||||| ||||||||    
T  21598505 tcctttaagtttgaggtttgtaacagattggtcctttaagttattttgatcccacataagtcctttaagt 21598574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 21598783 - 21598714
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| ||| ||    |||||||||||| || ||||||||| ||||||||    
T  21598783 tcctttaagtttgaggtttgtaacagattggtcctttaagttattttgttctcacataagtcctttaagt 21598714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 24059725 - 24059794
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaatt----agttaagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||| ||||| |||    | |||| ||||||||||||||||||||| ||||||||    
T  24059725 tcctttaagtttgaggtttataacagattgatcatttaaattattttggtcacacataagtcctttaagt 24059794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 7246381 - 7246292
Alignment:
Q  104 aggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| | || |||||||||||||| ||||||||||| ||| |    ||||||||||||||||| |||||||| ||||||||    
T  7246381 aggttaaattacatttgagatcctttaagtttgaggtttgtaacatattggtcttttaagttattttggtcatacataagtcctttaagt 7246292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 45038453 - 45038384
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| ||| ||    ||||||||||||||||||||||||| ||||||||    
T  45038453 tcctttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacacataagtcctttaagt 45038384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 2469874 - 2469968
Alignment:
Q  99 aaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||| ||||||||||||    ||||||||||||| ||||||||| | ||| |    |||||||||||||||||||| ||||| ||||||||    
T  2469874 aaaataggctaaattacactatcactcctttaagtttgaggtttgtaatagattggttctttaagttattttggtcacacctaagtcctttaagt 2469968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 40395159 - 40395217
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattag----ttaagttattttggtcacacataa 178  Q
    ||||||||||||| ||||||||||| |||||    ||||||||||||||||||||||||    
T  40395159 tcctttaagtttgaggtttgtaacatattagttctttaagttattttggtcacacataa 40395217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 41083033 - 41083123
Alignment:
Q  103 taggttaaattacactagatatcctttaagtttgtggtttgtaacaaatt----agttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||| |||||   ||||||||||||| ||||||||||| |||    | |||||||||||| |||||| |||||| ||||||||    
T  41083033 taggttaaattatactaggggtcctttaagtttgaggtttgtaacatattgatcatttaagttatttttgtcacatataagtcctttaagt 41083123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 50290183 - 50290239
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagtt--aagttattttggtcacacataa 178  Q
    ||||||||||||| ||||||| ||||||| |||  ||||||||||||||||||||||    
T  50290183 tcctttaagtttgaggtttgttacaaattggttttaagttattttggtcacacataa 50290239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 50290472 - 50290406
Alignment:
Q  127 tttaagtttgtggtttgtaacaaatt----agttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||| ||||||||| |||||    | ||||||||||||||||||||||||||| |||||||    
T  50290472 tttaagtttgaggtttgtaataaattgatcatttaagttattttggtcacacataagttttttaagt 50290406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 24684321 - 24684256
Alignment:
Q  126 ctttaagtttgtggtttgtaacaaattagtt--aagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||| ||||||||||| ||| |||  |||||||||  ||||||||||||| ||||||||    
T  24684321 ctttaagtttgaggtttgtaacagattggttttaagttatttcagtcacacataagtcctttaagt 24684256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 40147320 - 40147230
Alignment:
Q  103 taggttaaattacactagata-tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||  |||| ||||||||||||| ||||| ||| ||||| ||    |||||  |||||||||||||||||||||||||||    
T  40147320 taggttaaattacacc-gatagtcctttaagtttgaggtttataataaattggtcatttaagtcgttttggtcacacataagttctttaagt 40147230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 51950565 - 51950599
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  51950565 ttaagttattttggtcacacataagtcctttaagt 51950599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 2787950 - 2788014
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagtt--aagttattttggtcacacataagttctttaagt 189  Q
    |||||||||  ||||||||||| ||| |||  ||||||||||||||||||||||||  |||||||    
T  2787950 tttaagtttaaggtttgtaacatatttgttttaagttattttggtcacacataagtcatttaagt 2788014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 7246052 - 7246121
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||   ||||||||||||| ||    |||||||||||||| |||||||||| ||||||||    
T  7246052 tcctttaagtttgatatttgtaacaaattggtcgtttaagttattttggttacacataagtcctttaagt 7246121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 41083114 - 41083183
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||  |||||||||| ||| ||    |||||||||||| |||||||||||| ||||||||    
T  41083114 tcctttaagtttgaagtttgtaacatattggtcctttaagttattttgatcacacataagtcctttaagt 41083183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 33847790 - 33847703
Alignment:
Q  104 aggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaa 187  Q
    ||||||||||||||||||  |||||||||||||  |||||||||| |||  |    ||||||||||||||||||||||||| ||||||    
T  33847790 aggttaaattacactagaggtcctttaagtttgatgtttgtaacatattgttcctttaagttattttggtcacacataagtcctttaa 33847703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 25895274 - 25895184
Alignment:
Q  103 taggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||| |||||||||||||   ||||||||||||| ||||||||||| ||| ||    |||||||||||||||||||| |||| ||||||||    
T  25895274 taggctaaattacactaggagtcctttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacacaaaagtcctttaagt 25895184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 36217278 - 36217211
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagtt--aagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| |||||||||||||||  ||  ||||||||||||||||||||||||  |||||||    
T  36217278 tcctttaagtttgaggtttgtaacaaattgattttaagttattttggtcacacataagtcttttaagt 36217211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 29379970 - 29379902
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaag 188  Q
    |||||||||||||  |||||||||| ||||||    ||| |||||||||||||||||||||||||||||    
T  29379970 tcctttaagtttgacgtttgtaacatattagtcctttaaattattttggtcacacataagttctttaag 29379902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 25894965 - 25895034
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| | ||||||||||||| ||    ||||||||||||||| || |||||| ||||||||    
T  25894965 tcctttaagtttgagatttgtaacaaattggtcctttaagttattttggtcgcatataagtcctttaagt 25895034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 12028 - 12106
Alignment:
Q  101 aataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagtt--aagttattttggtcacacata 177  Q
    ||||||||||||||||| |    ||||||||||||| ||||||||| ||||| |||  |||||||||||||||||||||    
T  12028 aataggttaaattacaccaagggtcctttaagtttgaggtttgtaataaattggtttcaagttattttggtcacacata 12106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 12110 - 12177
Alignment:
Q  125 cctttaagtttgtggtttgtaacaaattagt---taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||| | ||||||||||||| ||   ||||||||||| |||||||| |||| ||||||||    
T  12110 cctttaagtttgagatttgtaacaaattggtccttaagttatttttgtcacacacaagtcctttaagt 12177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 23662215 - 23662147
Alignment:
Q  125 cctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||| ||||||||| ||||| ||    |||||||||||||| |||||||||||||||||||    
T  23662215 cctttaagtttgaggtttgtaataaattggtcctttaagttattttggttacacataagttctttaagt 23662147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 17400906 - 17400815
Alignment:
Q  102 ataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||| | |  ||||||||||||| | ||||||||| ||| ||    |||||||||||| |||||||||||| ||||||||    
T  17400906 ataggttaaattacaccataagtcctttaagtttgagatttgtaacatattggtcatttaagttattttgatcacacataagtcctttaagt 17400815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 1996201 - 1996271
Alignment:
Q  123 atcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||| ||||||||| | ||||||    ||||||||||||||||||||||||| || |||||    
T  1996201 atcctttaagtttggggtttgtaatagattagtcctttaagttattttggtcacacataagtcctataagt 1996271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 5746130 - 5746162
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaa 187  Q
    |||||||||||||||||||||||||||||||||    
T  5746130 ttaagttattttggtcacacataagttctttaa 5746162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 16327158 - 16327227
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| ||| ||    |||||||||||||| |||||||||| ||||||||    
T  16327158 tcctttaagtttgaggtttgtaacagattggtcgtttaagttattttggtaacacataagtcctttaagt 16327227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 25456251 - 25456344
Alignment:
Q  99 aaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagt---taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||||||| | |    ||||||||||||  ||||||||||| ||| ||   |||||||||||| |||||||||||| ||||||||    
T  25456251 aaaataggttaaattactcaatgggtcctttaagttttaggtttgtaacatattggtccttaagttattttgatcacacataagtcctttaagt 25456344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 32361231 - 32361295
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaa 187  Q
    ||||||||||  |||||||||||||||||    |||||||||||||||| ||||||||| |||||    
T  32361231 tttaagtttgaagtttgtaacaaattagtcccttaagttattttggtcatacataagttatttaa 32361295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 4943142 - 4943112
Alignment:
Q  155 ttaagttattttggtcacacataagttcttt 185  Q
    |||||||||||||||||||||||||||||||    
T  4943142 ttaagttattttggtcacacataagttcttt 4943112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 4943264 - 4943234
Alignment:
Q  155 ttaagttattttggtcacacataagttcttt 185  Q
    |||||||||||||||||||||||||||||||    
T  4943264 ttaagttattttggtcacacataagttcttt 4943234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 7209883 - 7209917
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  7209883 ttaagttattttggtcacacataagtcctttaagt 7209917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 14604072 - 14604134
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaagt 189  Q
    ||||| |||| ||||||||| | |||  | |||||||||||||||||||||||| ||||||||    
T  14604072 tttaaatttgaggtttgtaatagattgatcaagttattttggtcacacataagtcctttaagt 14604134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 20928118 - 20928084
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  20928118 ttaagttattttggtcacacataagtcctttaagt 20928084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 28559330 - 28559364
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  28559330 ttaagttattttggtcacacataagtcctttaagt 28559364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 32361203 - 32361237
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||||||||||||||||| |||||||    
T  32361203 ttaagttattttggtcacacataagttatttaagt 32361237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 14604308 - 14604275
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaag 188  Q
    |||||||||||||||||||||||||||| |||||    
T  14604308 ttaagttattttggtcacacataagttcgttaag 14604275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 35813632 - 35813566
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagtta----agttattttggtcacacataagttctttaagt 189  Q
    |||||||||  ||||||||||| ||||||||    |||||||||||| |||||||||| ||||||||    
T  35813632 tttaagtttaaggtttgtaacagattagttatttaagttattttggttacacataagtcctttaagt 35813566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 25456335 - 25456404
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| ||| ||    |||||||||||||||||| ||||||  |||||||    
T  25456335 tcctttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacaaataagtcttttaagt 25456404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 25456609 - 25456543
Alignment:
Q  126 ctttaagtttgtggtttgtaacaaattagt---taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||| ||||||||||| ||| ||   ||||||||||| ||||||||||| | ||||||||    
T  25456609 ctttaagtttgaggtttgtaacagattggtctttaagttattttagtcacacataaatactttaagt 25456543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 28022248 - 28022216
Alignment:
Q  157 aagttattttggtcacacataagttctttaagt 189  Q
    ||||||| |||||||||||||||||||||||||    
T  28022248 aagttatcttggtcacacataagttctttaagt 28022216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 161404 - 161473
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| ||| ||    ||| ||||||||||||||||||||| ||||||||    
T  161404 tcctttaagtttgaggtttgtaacagattggtcctttaacttattttggtcacacataagtcctttaagt 161473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 161707 - 161675
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaa 187  Q
    |||||||||||||||||||||||||| ||||||    
T  161707 ttaagttattttggtcacacataagtcctttaa 161675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 47069528 - 47069597
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||| |||| ||||||||||| ||| ||    |||||||||||| |||||||||||||||||||||    
T  47069528 tcctttaaatttgaggtttgtaacatattggtcctttaagttattttgatcacacataagttctttaagt 47069597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 30955078 - 30955017
Alignment:
Q  128 ttaagtttgtggtttgtaacaaattagt---taagttattttggtcacacataagttcttta 186  Q
    ||||||||| ||||||||| | ||||||   ||||||||||||||||||||||||| |||||    
T  30955078 ttaagtttgaggtttgtaatagattagtgtttaagttattttggtcacacataagtccttta 30955017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 30970890 - 30970829
Alignment:
Q  128 ttaagtttgtggtttgtaacaaattagt---taagttattttggtcacacataagttcttta 186  Q
    ||||||||| ||||||||| | ||||||   ||||||||||||||||||||||||| |||||    
T  30970890 ttaagtttgaggtttgtaatagattagtgtttaagttattttggtcacacataagtccttta 30970829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 14964924 - 14964958
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  14964924 ttaagttattttggtcacacataagtcctttaagt 14964958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 27657109 - 27657158
Alignment:
Q  99 aaaataggttaaattacactagatatcctttaagtttgtggtttgtaaca 148  Q
    |||| ||| |||||||||||| | |||||||||||||| |||||||||||    
T  27657109 aaaaaaggataaattacactaaagatcctttaagtttgaggtttgtaaca 27657158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 252106 - 252175
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||  ||||||||||| || |||    |||||||||||||||||| |||||| ||||||||    
T  252106 tcctttaagtttaaggtttgtaacagatcagtcttttaagttattttggtcacaaataagtcctttaagt 252175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 26976573 - 26976504
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| | ||||||||| || |||    |||||||||||||||||||||||||  |||||||    
T  26976573 tcctttaagtttgagctttgtaacatataagtcctttaagttattttggtcacacataagtcatttaagt 26976504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 28814135 - 28814066
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||| |||| ||||||||| | ||||||    |||||||||||| ||| |||||||||||||||||    
T  28814135 tcctttaaatttgaggtttgtaatagattagtcttttaagttattttgatcagacataagttctttaagt 28814066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 36667357 - 36667288
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||  ||||||||||| ||| ||    |||||||||||||||||||||||||  |||||||    
T  36667357 tcctttaagtttaaggtttgtaacagatttgtcctttaagttattttggtcacacataagtcttttaagt 36667288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 7489959 - 7490028
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||| ||||||||||| |||| |    ||||||||||||||||||||||| | ||||||||    
T  7489959 tcctttaagtttgaggtttgtaacagattaatcatttaagttattttggtcacacataaatcctttaagt 7490028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 38698916 - 38698964
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagttaagttattttggtcacaca 175  Q
    ||||| |||| | ||||||||||||| ||||||||||||||||||||||    
T  38698916 tttaactttgagatttgtaacaaattggttaagttattttggtcacaca 38698964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 1173075 - 1173139
Alignment:
Q  127 tttaagtttgtggtttgtaacaaattagtt---aagttattttggtcacacataagttctttaagt 189  Q
    |||||||||| ||||| ||||| |||||||   ||||||||||||||||||||||| |||||||||    
T  1173075 tttaagtttgaggtttataacagattagtttttaagttattttggtcacacataag-tctttaagt 1173139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 40892636 - 40892569
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaatt----agttaagttattttggtcacacataagttctttaa 187  Q
    |||||| |||||| ||||||||||| |||    | |||||||||||||||||||||||||| ||||||    
T  40892636 tcctttgagtttgaggtttgtaacatattgatcatttaagttattttggtcacacataagtcctttaa 40892569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 52913006 - 52913089
Alignment:
Q  99 aaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataa 178  Q
    |||||||||| |||||||| ||   || ||||||||||  |||||||||| ||||||    |||||||||||||||||||||||    
T  52913006 aaaataggtttaattacaccaggggtcttttaagtttgaagtttgtaacagattagtcctttaagttattttggtcacacataa 52913089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 52913174 - 52913208
Alignment:
Q  155 ttaagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  52913174 ttaagttattttggtcacacataagtcctttaagt 52913208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 18981086 - 18981119
Alignment:
Q  156 taagttattttggtcacacataagttctttaagt 189  Q
    ||||||||||||||||||||||||| ||||||||    
T  18981086 taagttattttggtcacacataagtcctttaagt 18981119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 26879763 - 26879669
Alignment:
Q  99 aaaataggttaaattacactagatatcctttaagtttgtggtttgtaacaaatt----agttaagttattttggtcacacataagttctttaagt 189  Q
    |||| ||||||||||| || |||  ||||||||||||| ||||||||||| |||    | ||||||||||||  ||||||||||||  |||||||    
T  26879763 aaaaaaggttaaattataccagaggtcctttaagtttgaggtttgtaacagattggtcatttaagttatttttatcacacataagtcttttaagt 26879669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 9007 - 9093
Alignment:
Q  101 aataggttaaattacactagatatcctt-taagtttgtggtttgtaacaaattagttaagttattttggtcacacataagttctttaa 187  Q
    |||||| ||||||||||||||  ||||| |||||||| ||||||||| | |||||| |  |||||||||||||| |||||| ||||||    
T  9007 aataggctaaattacactagag-tccttctaagtttgaggtttgtaatatattagtcattttattttggtcacatataagtcctttaa 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 1272 - 1203
Alignment:
Q  124 tcctttaagtttgtggtttgtaacaaattagt----taagttattttggtcacacataagttctttaagt 189  Q
    |||||||||||||  |||||||||| ||| ||    |||||||||||||||||||||||||  |||||||    
T  1272 tcctttaagtttgacgtttgtaacagattggtcctttaagttattttggtcacacataagtcatttaagt 1203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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