View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391A-Insertion-18 (Length: 130)
Name: NF1391A-Insertion-18
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391A-Insertion-18 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 5e-57; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 31080636 - 31080513
Alignment:
| Q |
7 |
acatgtttgaagagaaaaccaaagttttaagtctaaactcatgtggtaggttacaaggaagaagaaactccaatttttgaaggaaataatcatccaattc |
106 |
Q |
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| T |
31080636 |
acatgtttgaagagaaaaccaaagttttaagtctaaactcatgtggtaggttacaagaaagaagaaactccaatttttgaaggaaacaatcatccaattc |
31080537 |
T |
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| Q |
107 |
caaatccaacaagctgtatgaagg |
130 |
Q |
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| T |
31080536 |
caaatccaacaagctgtacgaagg |
31080513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 31027056 - 31026995
Alignment:
| Q |
64 |
gaagaagaaactccaatttttgaaggaaataatcatccaattccaaatccaacaagctgtat |
125 |
Q |
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| T |
31027056 |
gaagaagaaactccaatatttgaagcaaatattaatccaattccaaatccaacaagttgtat |
31026995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 31110517 - 31110414
Alignment:
| Q |
14 |
tgaagagaaaaccaaagttttaagtctaaactcatgtggtaggttacaaggaagaagaaactccaatttttgaaggaaataatcatccaattccaaatcc |
113 |
Q |
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| T |
31110517 |
tgaagagaaaaccgaagtttcaagtctaaactcatgcgg-aagttac--gaccgaagatactccaatatctaaaggaaatactaattcaattccaaatcc |
31110421 |
T |
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| Q |
114 |
aacaagc |
120 |
Q |
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||||||| |
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| T |
31110420 |
aacaagc |
31110414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 31069932 - 31069882
Alignment:
| Q |
69 |
agaaactccaatttttgaaggaaataatcatccaattccaaatccaacaag |
119 |
Q |
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| T |
31069932 |
agaaactccaatatctgaagcaaatactaatccaattccaaatccaacaag |
31069882 |
T |
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