View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1391A-Insertion-2 (Length: 618)
Name: NF1391A-Insertion-2
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391A-Insertion-2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 143 - 432
Target Start/End: Original strand, 32483245 - 32483534
Alignment:
| Q |
143 |
agttaaggactggacttgtactgtgacataaggtgtaaggtgtattaatcagaagcactagcagtttccgtgattgacccttttcagtgttatggttaag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483245 |
agttaaggactggacttgtactgtgacataaggtgtaaggtgtattaatcagaagcactagcagtttccgtgattgacccttttcagtgttatggttaag |
32483344 |
T |
|
| Q |
243 |
agagtgagtggtgaaataaaggaaagcaaaaacaaagagagaatcttttggtttagaggaattctctgaaaaagatagccaaatactgatgacatagttt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483345 |
agagtgagtggtgaaataaaggaaagcaaatacaaagagagaatcttttggtttagaggaattctctgaaaaagatagccaaatactgatgacatagttt |
32483444 |
T |
|
| Q |
343 |
tggaactatatctgctaacaatccaaccgtatcgattgcgtgtgtttatgttcaagcttaaaatctccaccatatttcatatctatcagc |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483445 |
tggaactatatctgctaacaatccaaccgtatcgattgcgtgtgtttatgttcaagcttaaaatctccaccatatttcatatctatcagc |
32483534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 492 - 618
Target Start/End: Original strand, 32483602 - 32483728
Alignment:
| Q |
492 |
tgaaaaacatcactgttatttagtagccctgaccaagaaagaaactgtttttcctcctctttcttagcacattccctctctctttcacatccacacatat |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483602 |
tgaaaaacatcactgttatttagtagccctgaccaagaaagaaactgtttttcctcctctttcttagcacattccctctctctttcacatccacacatat |
32483701 |
T |
|
| Q |
592 |
tctcacctcaatcactagctaccatca |
618 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32483702 |
tctcacctcaatcactagctaccatca |
32483728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 32483112 - 32483221
Alignment:
| Q |
7 |
atcttcttctcctttacaaagagatatttctaaacgccctagagatggttcaaatgctcttgttttaactcgtaattttcatacaggtactattatatga |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32483112 |
atcttcttctccattacaaagagatatttctaaacgccctagagatggttcaaatgctcttgtttcaactcgtaattttcatacaggtactattatatga |
32483211 |
T |
|
| Q |
107 |
atgtgatgca |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
32483212 |
atgtgatgca |
32483221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University