View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391A-Insertion-3 (Length: 768)
Name: NF1391A-Insertion-3
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391A-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 7 - 519
Target Start/End: Complemental strand, 37939284 - 37938772
Alignment:
| Q |
7 |
aagtgaaccaggaattcaatcattcaaacaagaggaagaagtgaaaccaaaggaagaaactgaaaatcaagaacaaacaggtgatagagtggaggttcac |
106 |
Q |
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| T |
37939284 |
aagtgaaccaggaattcaatcattcaaacaagaggaagaagtgaaaccaaaggaagaaactgaaaatcaagaacaaacaggtgatagagtggaggttcac |
37939185 |
T |
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| Q |
107 |
cctccaaaagactcggatattgaggcggtgaaagagaccaacaactctgggtcagaagcaattcttgtaaaagaagagaacattgatcctctgtctaatg |
206 |
Q |
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| T |
37939184 |
cctccaaaagactcggatattgaggcggtgaaagagaccaacaactctgggtcagaagcaattcttgtaaaagaagagaacattgatcctctgtctaatg |
37939085 |
T |
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| Q |
207 |
gagtggaggaaaagctaagtgaacaattacaagtaggtgaggaagttggagaaattattaaggaagtggagcccgagcaagcaactgacaaaactgaagg |
306 |
Q |
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| T |
37939084 |
gagtggaggaaaagctaagtgaacaattacaagtaggtgaggaagttggggaaattattaaggaagtggagcccgagcaagcaactgaaaaaactgaagg |
37938985 |
T |
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| Q |
307 |
atctaatggcaccatcaaagaagaggaaactgaacctaacacaacggttaatgctgcacaagttcagacaacccctgcaaatccggtggaaccttctcct |
406 |
Q |
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| T |
37938984 |
atctaatggcaccatcaaagaagaggaaactgaacctaacacaacggttaatgctgcacaagttcagacaacccctgcaaatctggtggaaccttctcct |
37938885 |
T |
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| Q |
407 |
gaagttgaagaaaagattgttgtagaagatggcaagaaagaagttgttgttgctgcagaggatgaaaagaaggaaccagaagcatctgatgctgtccaag |
506 |
Q |
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| T |
37938884 |
gaagttgaagaaaagattgttgtagaagatggcaagaaagaagttgttgttgctgcagaggatgaaaagaaggaaccagaagcatctgatgctgtccaag |
37938785 |
T |
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| Q |
507 |
tatcctcgagaga |
519 |
Q |
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| T |
37938784 |
tatcctcgagaga |
37938772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 548 - 760
Target Start/End: Complemental strand, 37938773 - 37938560
Alignment:
| Q |
548 |
gaacagaatgaggcaaagacagctacaattgaagcaggggagaccgagacaaaggtggaagaaatctctaaagctgtaaatgaacctgttagagaaacac |
647 |
Q |
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| T |
37938773 |
gaacagaatgaggcaaagacagctacaattgaagcaggggagaccgagacaaaggtggaagaaatctctaaagctgtaaatgaacctgttagagaaacac |
37938674 |
T |
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| Q |
648 |
tggcatctaaattcgaaaaagacgaggaggaaactattcaaaatggagtggataatttggagaaagaacgaattgaggagccagtgaaaactgagg-tga |
746 |
Q |
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| T |
37938673 |
ttgcatctaaattcgaaaaagacgaggaggaaactattcaaaatggagtggataatttggagaaagaacgaattgaggagccagtgaaaactgaggttga |
37938574 |
T |
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| Q |
747 |
atccgccaaggaaa |
760 |
Q |
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|||| ||||||||| |
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| T |
37938573 |
atccaccaaggaaa |
37938560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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