View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1391A-Insertion-4 (Length: 552)

Name: NF1391A-Insertion-4
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1391A-Insertion-4
NF1391A-Insertion-4
[»] chr1 (18 HSPs)
chr1 (75-397)||(4523720-4524042)
chr1 (412-542)||(21906017-21906147)
chr1 (413-542)||(48999047-48999175)
chr1 (416-542)||(5049096-5049221)
chr1 (416-542)||(27431126-27431252)
chr1 (416-542)||(22070145-22070271)
chr1 (416-542)||(48596681-48596806)
chr1 (419-542)||(34307782-34307905)
chr1 (195-283)||(43390367-43390455)
chr1 (415-477)||(26221340-26221401)
chr1 (425-530)||(9022867-9022971)
chr1 (416-476)||(23664516-23664576)
chr1 (416-477)||(36296358-36296418)
chr1 (416-477)||(42721895-42721955)
chr1 (416-493)||(1347089-1347167)
chr1 (416-477)||(28946200-28946260)
chr1 (417-466)||(9956586-9956634)
chr1 (416-493)||(32179162-32179238)
[»] chr2 (18 HSPs)
chr2 (414-542)||(19685437-19685564)
chr2 (416-542)||(33015529-33015654)
chr2 (416-542)||(44314377-44314502)
chr2 (416-542)||(44322556-44322681)
chr2 (416-542)||(2553702-2553825)
chr2 (416-542)||(41826299-41826422)
chr2 (416-542)||(22576318-22576442)
chr2 (414-542)||(6221026-6221153)
chr2 (416-477)||(2565275-2565335)
chr2 (414-477)||(90715-90777)
chr2 (416-491)||(45277853-45277927)
chr2 (416-477)||(18781563-18781623)
chr2 (416-492)||(7880699-7880774)
chr2 (416-466)||(18582955-18583004)
chr2 (427-476)||(40709902-40709951)
chr2 (414-466)||(38696796-38696847)
chr2 (416-477)||(19674457-19674517)
chr2 (505-542)||(27862140-27862177)
[»] chr7 (16 HSPs)
chr7 (413-533)||(4539509-4539628)
chr7 (416-549)||(31072855-31072988)
chr7 (416-542)||(18667012-18667136)
chr7 (416-542)||(8389635-8389760)
chr7 (416-542)||(43823964-43824094)
chr7 (416-542)||(13753759-13753883)
chr7 (416-477)||(19312328-19312388)
chr7 (414-477)||(48238114-48238176)
chr7 (416-477)||(8069234-8069294)
chr7 (416-477)||(48636360-48636420)
chr7 (416-466)||(15680119-15680168)
chr7 (419-483)||(20395179-20395243)
chr7 (415-466)||(12379302-12379352)
chr7 (416-477)||(135357-135417)
chr7 (498-542)||(24442263-24442307)
chr7 (416-460)||(45446447-45446491)
[»] chr6 (14 HSPs)
chr6 (414-549)||(21442391-21442526)
chr6 (416-542)||(1603013-1603138)
chr6 (416-542)||(22012450-22012575)
chr6 (416-542)||(34043181-34043306)
chr6 (417-542)||(18674997-18675121)
chr6 (415-542)||(20990099-20990222)
chr6 (415-483)||(15059810-15059878)
chr6 (415-477)||(14677385-14677446)
chr6 (416-466)||(31475170-31475219)
chr6 (416-477)||(33516980-33517040)
chr6 (415-483)||(1131415-1131483)
chr6 (419-474)||(34040410-34040465)
chr6 (416-457)||(9534336-9534376)
chr6 (446-542)||(22524548-22524643)
[»] chr5 (14 HSPs)
chr5 (416-542)||(9409888-9410013)
chr5 (416-542)||(13382937-13383062)
chr5 (416-542)||(2676608-2676733)
chr5 (416-542)||(42879239-42879363)
chr5 (414-545)||(18888709-18888841)
chr5 (416-542)||(13490034-13490157)
chr5 (415-542)||(39537723-39537846)
chr5 (487-546)||(23962565-23962624)
chr5 (415-493)||(38490701-38490779)
chr5 (416-476)||(7849977-7850036)
chr5 (416-483)||(5578999-5579066)
chr5 (417-491)||(33922678-33922751)
chr5 (416-466)||(41869418-41869467)
chr5 (416-477)||(43324107-43324167)
[»] scaffold0093 (1 HSPs)
scaffold0093 (413-546)||(50562-50700)
[»] chr8 (15 HSPs)
chr8 (416-542)||(3762339-3762465)
chr8 (416-549)||(1981234-1981366)
chr8 (416-542)||(31597165-31597289)
chr8 (415-542)||(7973317-7973443)
chr8 (416-512)||(45117137-45117232)
chr8 (416-542)||(40971089-40971213)
chr8 (417-542)||(39905874-39905996)
chr8 (416-493)||(6927907-6927983)
chr8 (416-542)||(4432407-4432531)
chr8 (415-477)||(3509846-3509907)
chr8 (416-477)||(11995099-11995159)
chr8 (416-476)||(16729378-16729438)
chr8 (416-483)||(7264024-7264091)
chr8 (445-483)||(28376148-28376186)
chr8 (470-542)||(18327011-18327082)
[»] scaffold0308 (1 HSPs)
scaffold0308 (416-526)||(12440-12550)
[»] chr4 (15 HSPs)
chr4 (416-549)||(10095353-10095485)
chr4 (416-542)||(39480589-39480714)
chr4 (414-542)||(6261955-6262081)
chr4 (416-477)||(14192704-14192764)
chr4 (416-477)||(28143836-28143896)
chr4 (416-477)||(38052595-38052655)
chr4 (416-477)||(51337307-51337367)
chr4 (416-483)||(7414121-7414188)
chr4 (416-483)||(7460202-7460269)
chr4 (416-466)||(14033726-14033775)
chr4 (413-480)||(29283368-29283434)
chr4 (416-457)||(36213396-36213437)
chr4 (449-521)||(41509549-41509618)
chr4 (416-477)||(49242563-49242623)
chr4 (491-543)||(3665796-3665847)
[»] chr3 (17 HSPs)
chr3 (416-541)||(27941852-27941976)
chr3 (416-542)||(19156736-19156861)
chr3 (415-542)||(53077303-53077431)
chr3 (423-542)||(15760509-15760627)
chr3 (416-542)||(52447788-52447910)
chr3 (416-545)||(25071278-25071409)
chr3 (416-512)||(10994487-10994581)
chr3 (416-477)||(6025146-6025206)
chr3 (416-477)||(23045262-23045322)
chr3 (416-477)||(31885335-31885395)
chr3 (469-542)||(24928177-24928248)
chr3 (416-477)||(1424344-1424404)
chr3 (416-493)||(30376917-30376993)
chr3 (416-460)||(36640723-36640766)
chr3 (416-466)||(1420204-1420253)
chr3 (416-466)||(22917793-22917842)
chr3 (413-477)||(9467857-9467919)
[»] scaffold0016 (4 HSPs)
scaffold0016 (416-542)||(89395-89517)
scaffold0016 (416-542)||(87968-88091)
scaffold0016 (416-542)||(88444-88567)
scaffold0016 (416-542)||(88920-89043)
[»] scaffold0601 (1 HSPs)
scaffold0601 (415-483)||(6427-6495)
[»] scaffold0116 (1 HSPs)
scaffold0116 (416-491)||(40460-40535)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 75 - 397
Target Start/End: Original strand, 4523720 - 4524042
Alignment:
Q  75 gtttggttaatatcataatattcacgataacctttataataaggagttaatagatagttatgataaatttattgacccttttctttggaacaaataacta 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  4523720 gtttggttaatatcataatattcacgataacctttataataaggagttaatagatagttatgataaatttattgacccttttctttggaacaagtaactg 4523819  T
Q  175 gctatgactacgaacgaacagagaagagagagctttgaggataagggaagcagagaatttctgtacacaaatcattcatatataggattctcaatcctca 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4523820 gctatgactacgaacgaacagagaagagagagctttgaggataagggaagtagagaatttatgtacacaaatcattcatatataggattctcaatcctca 4523919  T
Q  275 ctctattaatactgattgaatcaaatctaatttcacatggacatggattgtagtgtcttcatctcacaccaaatgaggtaaatattagatttccagttaa 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  4523920 ctctattaatactgattgaatcaaatctaatttcacatggacatggattgtactgtcttcatctcacaccaaatgaggtaaatattagatttccagataa 4524019  T
Q  375 ataaaaatgttttgtacattgac 397  Q
    |||||||||||||||||||||||    
T  4524020 ataaaaatgttttgtacattgac 4524042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 412 - 542
Target Start/End: Original strand, 21906017 - 21906147
Alignment:
Q  412 tgagcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatat 511  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |||||  |||||||||||||||||| |||||||    
T  21906017 tgagcagggccggccctagggcataggccgcgagtgcgacggcctagggtccatgccggtagggggcccaaaaagttttttaaggtaagggggtgtatat 21906116  T
Q  512 agaaatatttagattttggggggtatatata 542  Q
    | || ||||| ||||| ||||||||||||||    
T  21906117 aaaattatttggatttcggggggtatatata 21906147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 413 - 542
Target Start/End: Original strand, 48999047 - 48999175
Alignment:
Q  413 gagcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatata 512  Q
    |||||||| ||||| |||| |||| ||||||||||||||||||||||| |||||  |||||| || ||||||| ||||||||||||||||| ||||||||    
T  48999047 gagcagggtcggccatagggcataggccgcgagtgcgacggcctagggcccatgctggtaggaggcccaaatt-ttttttaaggtaagggggtgtatata 48999145  T
Q  513 gaaatatttagattttggggggtatatata 542  Q
    ||||||||| ||||||||||||||||||||    
T  48999146 gaaatatttggattttggggggtatatata 48999175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 5049096 - 5049221
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||| |||| |||| |||||||||||    
T  5049096 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaatttttttttacggtacgggggtgtatatagaa 5049195  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| || ||| |||||||||||||    
T  5049196 atatttgga-tttcgggggtatatata 5049221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 27431252 - 27431126
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||| ||||||||| |||| |||||||||| |||||||||||  ||||| ||||||||||||||| || |||||||||||||| || |||||||||||    
T  27431252 cagggctggccctagggcataggccgcgagtgtgacggcctaggacccatgccggtagggggtccaattttttttttaaggtaagagggtgtatatagaa 27431153  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||| | ||||||||    
T  27431152 atatttggatttcgggagatatatata 27431126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 22070145 - 22070271
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| |||| |||||||||||||||||| ||||| |||||||||| |||||       ||||| ||||||| |||||||||||    
T  22070145 cagggccggccctagggcataggccgtgagtgcgacggcctagggcccatgccggtagggggcccaaaaaaaaaattaagataagggggtgtatatagaa 22070244  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||||||| ||||||    
T  22070245 atatttggatttaggggggtgtatata 22070271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 48596806 - 48596681
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||| | |||| | ||||||||||||||||||| | ||||| | ||||||||||||||     ||||||||||||||| |||||||||||    
T  48596806 cagggccggccctaaggcataggtcgcgagtgcgacggcctagagcccatgccagtagggggtccaaa-aaaattttaaggtaagggggtgtatatagaa 48596708  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||  |||| ||||||||    
T  48596707 atatttggatttcaggggatatatata 48596681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 419 - 542
Target Start/End: Complemental strand, 34307905 - 34307782
Alignment:
Q  419 ggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttt-tttaaggtaaggggatgtatatagaaat 517  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||| || ||||||| |||||       |||||||||||||| || ||||||||||    
T  34307905 ggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggcccaaaaaaaaaatttaaggtaagggggtgcatatagaaat 34307807  T
Q  518 atttagattttggggggtatatata 542  Q
    |||| ||||| ||||||||||||||    
T  34307806 atttggatttcggggggtatatata 34307782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 43390367 - 43390455
Alignment:
Q  195 gagaagagagagctttgaggataagggaagcagagaatttctgtacacaaatcattcatatataggattctcaatcctcactctattaa 283  Q
    |||| ||||||||||| || ||||||||||  |||||||||| |||||||||||| |||||  ||||||| ||||||||||||||||||    
T  43390367 gagaggagagagcttttagaataagggaagaggagaatttctttacacaaatcatccatattaaggattcgcaatcctcactctattaa 43390455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 415 - 477
Target Start/End: Original strand, 26221340 - 26221401
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  26221340 gcagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgtcggtaggggg 26221401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 425 - 530
Target Start/End: Original strand, 9022867 - 9022971
Alignment:
Q  425 ccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaaatatttaga 524  Q
    ||||||| |||| |||| |||||||| ||||||||| ||||| |||||||||| |||||    |||||||||||||||| ||||||||||||||||| |     
T  9022867 ccctagggcataggccgggagtgcgatggcctagggcccatgccggtaggggg-ccaaaaaaatttttaaggtaagggggtgtatatagaaatatttggt 9022965  T
Q  525 ttttgg 530  Q
    ||||||    
T  9022966 ttttgg 9022971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 476
Target Start/End: Complemental strand, 23664576 - 23664516
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggg 476  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| || ||||||||||||    
T  23664576 cagggccggccctagggcatacgccacgagtgcgacggcctagggcccttgtcggtagggg 23664516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 36296358 - 36296418
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  36296358 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 36296418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 42721895 - 42721955
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  42721895 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 42721955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 1347167 - 1347089
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtcc--aaattgtttttta 493  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| |||||   |||||||| ||  |||||||||||||    
T  1347167 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgctcgtagggggccctaaaattgtttttta 1347089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 28946260 - 28946200
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| |||||||||||||||| || ||||| ||||||||||    
T  28946260 cagggccggccctagg-cataggccacgagtgcgacggcctaaggcccatgccggtaggggg 28946200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 466
Target Start/End: Original strand, 9956586 - 9956634
Alignment:
Q  417 agggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    ||||||||||||||| || | ||||||||||||||||||||||| |||||    
T  9956586 agggccggccctagg-cacaggccgcgagtgcgacggcctagggcccatg 9956634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 32179238 - 32179162
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgtttttta 493  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||  ||||   |||||||| || |||| |||||||    
T  32179238 cagggccggccttagg-cataggccgcgagtgcgacggcctagggctcatgctcgtagggggccctaattttttttta 32179162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 414 - 542
Target Start/End: Original strand, 19685437 - 19685564
Alignment:
Q  414 agcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatag 513  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||| || ||||||| ||||||||||||||||| |||||||||    
T  19685437 agcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggaggcccaaatt-ttttttaaggtaagggggtgtatatag 19685535  T
Q  514 aaatatttagattttggggggtatatata 542  Q
    |||||||| ||||||||||||||||||||    
T  19685536 aaatatttggattttggggggtatatata 19685564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 33015654 - 33015529
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| |||||||||| |||||||||||| ||||| |||||||||| ||||| | ||||||||||||||||| |||||||||||    
T  33015654 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggcccaaaat-ttttttaaggtaagggggtgtatatagaa 33015556  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||||| ||||||||    
T  33015555 atatttggatttcgggggatatatata 33015529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 44314502 - 44314377
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||||| |||     ||||||||||||||| |||||||||||    
T  44314502 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtctaaa-aaaattttaaggtaagggggtgtatatagaa 44314404  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||  |||||||||||||    
T  44314403 atatttggatttcagggggtatatata 44314377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 44322681 - 44322556
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||||| |||     ||||||||||||||| |||||||||||    
T  44322681 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtctaaa-aaaattttaaggtaagggggtgtatatagaa 44322583  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||  |||||||||||||    
T  44322582 atatttggatttcagggggtatatata 44322556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 2553702 - 2553825
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| || || ||||| |||| |||| || ||||||||||||  ||| | |||||||||    
T  2553702 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggta-ggggcccaattttttttttaaggta--ggggtatatatagaa 2553798  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||| |||||||||||||    
T  2553799 atatttggattttagggggtatatata 2553825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 41826422 - 41826299
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||| ||||| ||||||||||||| || || ||||| |||| |||| || ||||||||||||  ||| | |||||||||    
T  41826422 cagggccggccctagggcataggccacgagtacgacggcctagggcccttgccggta-ggggcccaattttttttttaaggta--ggggtatatatagaa 41826326  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||| |||||||||||||    
T  41826325 atatttggattttagggggtatatata 41826299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 22576442 - 22576318
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    ||||||| |||||||| |||| |||  |||||||||||||||||| ||||| |||||||||| |||||   |||||||| ||  |||| |||||||||||    
T  22576442 cagggccagccctagggcataggccatgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaatgt--gggggtgtatatagaa 22576345  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||  ||||||| |||||    
T  22576344 atatttggatttgtgggggtacatata 22576318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 414 - 542
Target Start/End: Original strand, 6221026 - 6221153
Alignment:
Q  414 agcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatag 513  Q
    ||||| |||||||||||  |||| |||||||||||||||||||| || | ||| |||||||||| |||||    | |||||||||||| | |||||||||    
T  6221026 agcagagccggccctagagcataggccgcgagtgcgacggcctaaggcctatgccggtagggggcccaaa-aaatctttaaggtaaggaggtgtatatag 6221124  T
Q  514 aaatatttagattttggggggtatatata 542  Q
    || ||||| ||||| ||||| ||||||||    
T  6221125 aagtatttggatttcgggggatatatata 6221153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 2565275 - 2565335
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||    
T  2565275 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtaggggg 2565335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 477
Target Start/End: Complemental strand, 90777 - 90715
Alignment:
Q  414 agcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  90777 agcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 90715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 45277927 - 45277853
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttt 491  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| |||||||||| || |||| |||||    
T  45277927 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggccctaatttttttt 45277853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 18781623 - 18781563
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  18781623 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 18781563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 7880774 - 7880699
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgtttttt 492  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| || ||||||| || |||| ||||||    
T  7880774 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccgttagggggccctaattttttttt 7880699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 18583004 - 18582955
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  18583004 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatg 18582955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 476
Target Start/End: Complemental strand, 40709951 - 40709902
Alignment:
Q  427 ctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggg 476  Q
    ||||| |||| ||||||||||||||||||||||| ||||| |||||||||    
T  40709951 ctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 40709902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 38696796 - 38696847
Alignment:
Q  414 agcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    |||||||||||||||||| |||| || |||||||||||||||||||| |||||    
T  38696796 agcagggccggccctagg-cataggctgcgagtgcgacggcctagggcccatg 38696847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 19674457 - 19674517
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| | | | ||||||||||||||||| ||||| ||||||||||    
T  19674457 cagggccggccctagg-cataggtcacaagtgcgacggcctagggcccatgccggtaggggg 19674517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 542
Target Start/End: Complemental strand, 27862177 - 27862140
Alignment:
Q  505 tgtatatagaaatatttagattttggggggtatatata 542  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  27862177 tgtatataaaaatatttggattttggggggtatatata 27862140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 413 - 533
Target Start/End: Original strand, 4539509 - 4539628
Alignment:
Q  413 gagcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatata 512  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||| |||||| ||||||| ||||||||||||||||| ||||||||    
T  4539509 gagcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccgggagggggcccaaatt-ttttttaaggtaagggggtgtatata 4539607  T
Q  513 gaaatatttagattttggggg 533  Q
    ||||||||| ||||| |||||    
T  4539608 gaaatatttggatttaggggg 4539628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 416 - 549
Target Start/End: Complemental strand, 31072988 - 31072855
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgtttttt--aaggtaaggggatgtatatag 513  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||  |||||||||| |||| || ||||||  ||||||||||| |||||||||    
T  31072988 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatcccggtagggggcccaattttttttttttaaggtaagggg-tgtatatag 31072891  T
Q  514 aaatatttagattttggggggtatatataaaaacat 549  Q
    |||||||| |||||||| ||||||||||| ||||||    
T  31072890 aaatatttggattttggagggtatatatagaaacat 31072855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 18667012 - 18667136
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| || || |||||||||| ||||||| ||||||||||||  ||| ||| |||||||    
T  18667012 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggtagggggcccaaatttttttttaaggta--ggggtgtttatagaa 18667109  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||| |||||||||||||    
T  18667110 atatttggattttagggggtatatata 18667136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 8389760 - 8389635
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||| |||||    | |||||||||||||| |||||||||||    
T  8389760 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaa-aaatctttaaggtaagggggtgtatatagaa 8389662  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||||| ||| ||||    
T  8389661 atatttggatttcgggggatatgtata 8389635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 43823964 - 43824094
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtcca----aattgttttttaaggtaaggggatgtatat 511  Q
    ||||||||| |||||| |||| ||| ||||||||||||||||||| ||||| |||||||||| |||      || |||||||||||  || | |||||||    
T  43823964 cagggccggtcctagggcataggccacgagtgcgacggcctagggcccatgccggtagggggcccagttttttttttttttaaggtggggaggtgtatat 43824063  T
Q  512 agaaatatttagattttggggggtatatata 542  Q
    |||||||||| ||||||||||||||||||||    
T  43824064 agaaatatttggattttggggggtatatata 43824094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 13753759 - 13753883
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| |||||||||||||| |||||||| || || ||||||||||   || || ||||||||||||  ||| ||| |||||||    
T  13753759 cagggccggccctagggcataggccgcgagtgcgacagcctagggcccttgccggtagggggcggaattttttttttaaggta--ggggtgtttatagaa 13753856  T
Q  516 atatttagattttggggggtatatata 542  Q
     ||||| |||||| |||||||||||||    
T  13753857 gtatttggatttttgggggtatatata 13753883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 19312388 - 19312328
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||    
T  19312388 cagggccggccctagg-cataggccgtgagtgcgacggcctagggtccatgccggtaggggg 19312328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 477
Target Start/End: Original strand, 48238114 - 48238176
Alignment:
Q  414 agcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  48238114 agcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 48238176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 8069234 - 8069294
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  8069234 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 8069294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 48636360 - 48636420
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  48636360 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 48636420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 15680168 - 15680119
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  15680168 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatg 15680119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 20395243 - 20395179
Alignment:
Q  419 ggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    |||| |||||||| |||| ||| ||||||||||||||||||  || || ||||||||||||||||    
T  20395243 ggccagccctagggcataggccacgagtgcgacggcctaggtcccttgccggtagggggtccaaa 20395179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 12379302 - 12379352
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||| |||||    
T  12379302 gcagggccggcccaagg-cataggccgcgagtgcgacggcctagggcccatg 12379352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 135357 - 135417
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| | || |||||||||||||||||| ||||| | ||||||||    
T  135357 cagggccggccctagg-cataggtcgggagtgcgacggcctagggcccatgcctgtaggggg 135417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 24442307 - 24442263
Alignment:
Q  498 aaggggatgtatatagaaatatttagattttggggggtatatata 542  Q
    ||||||||||||||||||| |||||| || ||| |||||||||||    
T  24442307 aaggggatgtatatagaaaaatttagtttatggagggtatatata 24442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 460
Target Start/End: Complemental strand, 45446491 - 45446447
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctaggg 460  Q
    |||||||||||||||| |||| |||||||||| |||| |||||||    
T  45446491 cagggccggccctaggccataggccgcgagtgtgacgacctaggg 45446447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 414 - 549
Target Start/End: Original strand, 21442391 - 21442526
Alignment:
Q  414 agcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggg-gatgtatata 512  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |||||| | ||||||||    
T  21442391 agcagggccggccctagagcataggccgcgagtgcgacggcctagggtccatgccggtagggggcccaaatt-ttttttaagataagggaggtgtatata 21442489  T
Q  513 gaaatatttagattttggggggtatatataaaaacat 549  Q
    ||||||||| ||||| ||||| |||||||| ||||||    
T  21442490 gaaatatttggatttcgggggatatatatagaaacat 21442526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 1603013 - 1603138
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||    | |||||||||||||| |||||||||||    
T  1603013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtccaaa-aaatctttaaggtaagggggtgtatatagaa 1603111  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||||| ||||||||    
T  1603112 atatttggatttcgggggatatatata 1603138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 22012575 - 22012450
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||||| |||     ||||||||||||||| |||||||||||    
T  22012575 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtctaaa-aaaattttaaggtaagggggtgtatatagaa 22012477  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||  |||||||||||||    
T  22012476 atatttggatttcagggggtatatata 22012450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 34043181 - 34043306
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| |||||||||| |||||||||||| ||||| |||||||||| |||||   ||||||||||||||||  |||||||||||    
T  34043181 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggcccaaa-aattttttaaggtaagggagtgtatatagaa 34043279  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||||| ||||||||    
T  34043280 atatttggatttcgggggttatatata 34043306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 417 - 542
Target Start/End: Original strand, 18674997 - 18675121
Alignment:
Q  417 agggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaagggga-tgtatatagaa 515  Q
    ||||||||||||| | |||| |||||| |||||||||||||||| || || ||||||||||||||||||  ||||||||||  ||||| |||||||||||    
T  18674997 agggccggccctaaggcataggccgcgggtgcgacggcctagggcccttgccggtagggggtccaaatttgtttttaaggt--ggggagtgtatatagaa 18675094  T
Q  516 atatttagattttggggggtatatata 542  Q
    ||||||| |||||||||  ||||||||    
T  18675095 atatttaaattttggggaatatatata 18675121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 415 - 542
Target Start/End: Original strand, 20990099 - 20990222
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatataga 514  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| || || ||||| |||| ||||||| |||||||| |||  ||| ||| ||||||    
T  20990099 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggta-ggggcccaaatt-ttttttaatgta--ggggtgtttataga 20990194  T
Q  515 aatatttagattttggggggtatatata 542  Q
    ||||||| |||||| |||||||||||||    
T  20990195 aatatttggattttagggggtatatata 20990222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 15059810 - 15059878
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  15059810 gcagggccggccctagggcatatgccgggagtgcaacggcctagggcccatgtcggtagggggtccaaa 15059878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 477
Target Start/End: Original strand, 14677385 - 14677446
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||    
T  14677385 gcagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtaggggg 14677446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 31475219 - 31475170
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  31475219 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatg 31475170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 33517040 - 33516980
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||| ||||||||||| ||||| ||||||||||    
T  33517040 cagggccggccctagg-cataggccacgagtgcaacggcctagggcccatgccggtaggggg 33516980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 1131415 - 1131483
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    ||||||||||||||||| |||| |||  |||||||||||||||| | || || |||||||||| |||||    
T  1131415 gcagggccggccctagggcataggccaagagtgcgacggcctagagcccttgccggtagggggcccaaa 1131483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 474
Target Start/End: Complemental strand, 34040465 - 34040410
Alignment:
Q  419 ggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagg 474  Q
    ||||||||||||| ||||  || ||||||||||||||||||| ||||| |||||||    
T  34040465 ggccggccctagggcatagaccacgagtgcgacggcctagggcccatgccggtagg 34040410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 9534376 - 9534336
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggccta 457  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  9534376 cagggccggccctagg-cataggccgcgagtgcgacggccta 9534336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 542
Target Start/End: Original strand, 22524548 - 22524643
Alignment:
Q  446 tgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaaatatttagattttggggggtatatata 542  Q
    ||||||||||||||| ||||| |  |||||||||| || | |||||| | |||  ||| ||||||||||||||||| | |||| |||||| ||||||    
T  22524548 tgcgacggcctagggcccatgcctttagggggtcctaagtttttttttatgtagaggg-tgtatatagaaatatttggtttttagggggtttatata 22524643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 9410013 - 9409888
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggt-aaggggatgtatataga 514  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||  |||||  |||||||||    
T  9410013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgtcggtagggggtccaaaagtttttttaaggtgtagggg--gtatataga 9409916  T
Q  515 aatatttagattttggggggtatatata 542  Q
    ||||||| ||||||||||||||||||||    
T  9409915 aatatttggattttggggggtatatata 9409888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 13383062 - 13382937
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| || ||||||| ||||| | ||||||||||||||||| || ||||||||    
T  13383062 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggcccaaaattttttttaaggtaagggggtgcatatagaa 13382964  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||||| ||| ||||||||    
T  13382963 atatttggattttgagggatatatata 13382937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 2676608 - 2676733
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||| |||||    | |||||||||||||| |||||||||||    
T  2676608 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaa-aaatctttaaggtaagggggtgtatatagaa 2676706  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||||| ||||||||    
T  2676707 atatttggatttcgggggatatatata 2676733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 42879239 - 42879363
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||  | ||| | |||||||||||   ||| |||||||||||    
T  42879239 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggcccaaaagt-ttttttaaggtgtaggg-tgtatatagaa 42879336  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||| |||||||||||||    
T  42879337 atatttggattttagggggtatatata 42879363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 414 - 545
Target Start/End: Original strand, 18888709 - 18888841
Alignment:
Q  414 agcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatag 513  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||  ||||      |||||||||||||| |||||||||    
T  18888709 agcatggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggctcaaaaaaaaatttaaggtaagggggtgtatatag 18888808  T
Q  514 aaatatttagattttggggg-gtatatataaaa 545  Q
    |||||||| ||||| ||||| ||||||| ||||    
T  18888809 aaatatttggatttagggggtgtatatagaaaa 18888841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 13490034 - 13490157
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||| | |||| ||||||||||||||||||||||| || || |||||||||| || |||| |||||||||  | |||| |||||||| ||    
T  13490034 cagggccggccctaagccataggccgcgagtgcgacggcctagggcccttgccggtaggggg-cccaatttttttttaag--atgggggtgtatataaaa 13490130  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||||||||| |||||||    
T  13490131 atatttggattttggggggaatatata 13490157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 415 - 542
Target Start/End: Complemental strand, 39537846 - 39537723
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatataga 514  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||| |  || |||||||||| ||||||| ||||||||||  ||||| ||||| || |    
T  39537846 gcagggccggccctagggcataggccgcaagtgcgacggcctagggcctttgccggtagggggcccaaatt-ttttttaagg--agggggtgtatgtaaa 39537750  T
Q  515 aatatttagattttggggggtatatata 542  Q
    ||||||| |||||| |||||||||||||    
T  39537749 aatatttggatttt-gggggtatatata 39537723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 546
Target Start/End: Original strand, 23962565 - 23962624
Alignment:
Q  487 ttttttaaggtaaggggatgtatatagaaatatttagattttggggggtatatataaaaa 546  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  23962565 ttttttaaggtaagggggtgtatatagaaatatttggatttcggggggtatatataaaaa 23962624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 493
Target Start/End: Original strand, 38490701 - 38490779
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtcc-aaattgtttttta 493  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||| ||||| |||||||||| || ||||| |||||||    
T  38490701 gcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggccctaaattttttttta 38490779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 7849977 - 7850036
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggg 476  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| |||||||||    
T  7849977 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 7850036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 5579066 - 5578999
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    |||||||||||||||| |||| ||| |||||||||||| |||||| || || |||||||||| |||||    
T  5579066 cagggccggccctagggcataggccacgagtgcgacgggctagggcccttgccggtagggggcccaaa 5578999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 33922751 - 33922678
Alignment:
Q  417 agggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttt 491  Q
    ||||||||||||||| |||| |||| | || ||||||||||||||||  | ||||||||||||| ||||||||||    
T  33922751 agggccggccctaggccataggccgggggtacgacggcctagggtcctagccggtagggggtcc-aattgttttt 33922678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 41869418 - 41869467
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  41869418 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatg 41869467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 43324167 - 43324107
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| |||| | |||||||||||||||| ||||| | ||||||||    
T  43324167 cagggccggccctagg-cataggccgggggtgcgacggcctagggcccatgcccgtaggggg 43324107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 413 - 546
Target Start/End: Original strand, 50562 - 50700
Alignment:
Q  413 gagcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa-----ttgttttttaaggtaaggggatgt 507  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||  |||| |||||||||| |||||     || ||||||||||||||||| |||    
T  50562 gagcagggccggccctagggcataggccgcaagtgcgacggcctagggcacatgccggtagggggcccaaactttttttttttttaaggtaagggggtgt 50661  T
Q  508 atatagaaatatttagattttggggggtatatataaaaa 546  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  50662 atatagaaatatttggatttcggggggtatatataaaaa 50700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 3762339 - 3762465
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||| |||| || ||||||||||||| ||| |||||||||||    
T  3762339 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaattttttttttaaggtaacggggtgtatatagaa 3762438  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||   ||||||||||||    
T  3762439 atatttggatttcaaggggtatatata 3762465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 416 - 549
Target Start/End: Original strand, 1981234 - 1981366
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||  |||||| ||||||||||||||||| |||||||||||    
T  1981234 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggctcaaatt-ttttttaaggtaagggggtgtatatagaa 1981332  T
Q  516 atatttagattttggggggtatatataaaaacat 549  Q
    |||||| |||||  |||  |||||||| ||||||    
T  1981333 atatttggatttctgggaatatatatagaaacat 1981366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 31597165 - 31597289
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| || |||||||  |||||| ||||||||||||||||| || ||||||||    
T  31597165 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggctcaaatt-ttttttaaggtaagggggtgcatatagaa 31597262  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||| ||||||||||    
T  31597263 atatttggatttcgggaggtatatata 31597289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 415 - 542
Target Start/End: Complemental strand, 7973443 - 7973317
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggt-aaggggatgtatatag 513  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||| ||||| |||||||||| |||||   |||||||||||  |||||  ||||||||    
T  7973443 gcagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaaggtgtagggg--gtatatag 7973346  T
Q  514 aaatatttagattttggggggtatatata 542  Q
    |||||||| ||||||||||||||||||||    
T  7973345 aaatatttggattttggggggtatatata 7973317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 416 - 512
Target Start/End: Original strand, 45117137 - 45117232
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatata 512  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||| | ||||||||    
T  45117137 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtccaaaat-ttttttaaggtaaggaggtgtatata 45117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 40971089 - 40971213
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||| || ||  |||||||||||||| || ||||||||||||  ||| | ||||||||     
T  40971089 cagggccggccctagggcataggccgcgagtgcgatggcctagggcccttgctggtagggggtccaattttttttttaaggta--ggggtatatatagat 40971186  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||| |||||||||||||    
T  40971187 atatttggattttagggggtatatata 40971213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 542
Target Start/End: Original strand, 39905874 - 39905996
Alignment:
Q  417 agggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaaa 516  Q
    ||||| ||||||| | |||| ||||||||| |||||||||| || || |  |||||||||| |||| || |||||||||||  |||| ||||| ||||||    
T  39905874 agggctggccctacggcataggccgcgagttcgacggcctacggcccttaccggtagggggcccaattt-ttttttaaggt--gggggtgtatgtagaaa 39905970  T
Q  517 tatttagattttggggggtatatata 542  Q
    ||||| ||||||||||||||||||||    
T  39905971 tatttggattttggggggtatatata 39905996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 6927983 - 6927907
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgtttttta 493  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| |||||||||| || |||| |||||||    
T  6927983 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggccctaattttttttta 6927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 4432531 - 4432407
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||| ||| |||| ||||| | |||||||||||||||||| || |||| ||||| |||||     ||||||| |  |||| |||||||| ||    
T  4432531 cagggccggcccaagggcataggccgcaattgcgacggcctagggtccttgccggtggggggcccaaa-aaacttttaagat-ggggggtgtatataaaa 4432434  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||||||||||||||||||    
T  4432433 atatttggattttggggggtatatata 4432407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 477
Target Start/End: Original strand, 3509846 - 3509907
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||| |||||||||| |||| ||||||||||||||||||||||  ||||||| ||||||||    
T  3509846 gcagggtcggccctagg-cataggccgcgagtgcgacggcctaggacccatgtctgtaggggg 3509907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 11995159 - 11995099
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||| ||||||||| ||||| ||||||||||    
T  11995159 cagggccggccctagg-cataggccacgagtgcgatggcctagggcccatgccggtaggggg 11995099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 16729378 - 16729438
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggg 476  Q
    |||||||||||||||| |||| | | ||||||||||||||||||| || || |||||||||    
T  16729378 cagggccggccctagggcataggtcacgagtgcgacggcctagggcccttgccggtagggg 16729438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 7264091 - 7264024
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    |||||||||||||||| |||| ||| |||||||||||| |||||| || ||  |||||||||| ||||    
T  7264091 cagggccggccctagggcataggccacgagtgcgacggtctagggcccttgctggtagggggttcaaa 7264024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 28376148 - 28376186
Alignment:
Q  445 gtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  28376148 gtgccacggcctagggcccatgtcggtagggggtccaaa 28376186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 542
Target Start/End: Original strand, 18327011 - 18327082
Alignment:
Q  470 gtagggggtccaaattgttttttaaggtaaggggatgtatatagaaatatttagattttggggggtatatata 542  Q
    |||||||| ||||||| |||||| ||||  |||| |||||||||||||| || |||||||||| || ||||||    
T  18327011 gtagggggcccaaattttttttttaggtgggggg-tgtatatagaaatagttggattttggggtgtctatata 18327082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 416 - 526
Target Start/End: Complemental strand, 12550 - 12440
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||| ||||| |||||||||| ||||| | ||||||||||||||||| |||||||||||    
T  12550 cagggccggccctagggcataggccgcgagtgcgacgtcctagggcccatgccggtagggggcccaaaattttttttaaggtaagggggtgtatatagaa 12451  T
Q  516 atatttagatt 526  Q
    |||||| ||||    
T  12450 atatttggatt 12440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 416 - 549
Target Start/End: Complemental strand, 10095485 - 10095353
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||  ||||||| |||||||||||||| || |||||||||||    
T  10095485 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggacccaaatt-ttttttaaggtaagagggtgtatatagaa 10095387  T
Q  516 atatttagattttggggggtatatataaaaacat 549  Q
    |||||| |||||  |||  |||||||| ||||||    
T  10095386 atatttggatttctgggaatatatatagaaacat 10095353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 39480714 - 39480589
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggt-aaggggatgtatataga 514  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||| |||||   |||||||| ||  |||||  |||||||||    
T  39480714 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaaagtgtagggg--gtatataga 39480617  T
Q  515 aatatttagattttggggggtatatata 542  Q
    ||||||| ||||||||||||||||||||    
T  39480616 aatatttggattttggggggtatatata 39480589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 414 - 542
Target Start/End: Complemental strand, 6262081 - 6261955
Alignment:
Q  414 agcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatag 513  Q
    |||||||||||||||||| |||| |||||||||||||||||||| || ||||| |||||||||| |||||   |||||||||||   ||| |||||||||    
T  6262081 agcagggccggccctagggcataggccgcgagtgcgacggcctaagg-ccatgccggtagggggcccaaaagtttttttaaggtgtaggg-tgtatatag 6261984  T
Q  514 aaatatttagattttggggggtatatata 542  Q
    |||||||  |||||||| |||||||||||    
T  6261983 aaatattaggattttggagggtatatata 6261955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 14192764 - 14192704
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||    
T  14192764 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtaggggg 14192704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 28143896 - 28143836
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  28143896 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 28143836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 38052595 - 38052655
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| | ||||||||    
T  38052595 cagggccggccctagg-cataggccgcgagtgcgacggcctaggggccatgcccgtaggggg 38052655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 51337307 - 51337367
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  51337307 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 51337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 7414188 - 7414121
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    ||||||||| ||||||  ||| ||| ||||||||||||||||| | ||||| ||||||||||||||||    
T  7414188 cagggccggtcctaggggataggccacgagtgcgacggcctagagcccatgccggtagggggtccaaa 7414121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 7460269 - 7460202
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    ||||||||| ||||||  ||| ||| ||||||||||||||||| | ||||| ||||||||||||||||    
T  7460269 cagggccggtcctaggggataggccacgagtgcgacggcctagagcccatgccggtagggggtccaaa 7460202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 14033775 - 14033726
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  14033775 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatg 14033726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 480
Target Start/End: Complemental strand, 29283434 - 29283368
Alignment:
Q  413 gagcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtcc 480  Q
    ||||||||||||||||| | |||| |||| | |||||||||||||||| || || |||||||||||||    
T  29283434 gagcagggccggccctatg-cataggccgtgggtgcgacggcctagggcccttgccggtagggggtcc 29283368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 36213396 - 36213437
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggccta 457  Q
    |||||||||||||||| |||| ||||||| ||||||||||||    
T  36213396 cagggccggccctagggcataggccgcgaatgcgacggccta 36213437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 521
Target Start/End: Complemental strand, 41509618 - 41509549
Alignment:
Q  449 gacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaaatattt 521  Q
    |||||||||||| ||||| ||||| |||| || |||| |||||||||||  |||| |||||||||||||||||    
T  41509618 gacggcctagggcccatgccggta-ggggccctaatttttttttaaggt--gggggtgtatatagaaatattt 41509549  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 49242563 - 49242623
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| |||| |||||||||||||||||| || || | ||||||||    
T  49242563 cagggccggccctagg-cataggccgggagtgcgacggcctagggcccttgcccgtaggggg 49242623  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 3665847 - 3665796
Alignment:
Q  491 ttaaggtaaggggatgtatatagaaatatttagattttggggggtatatataa 543  Q
    ||||||| ||||| ||||||||||||||||| | ||||||| |||||||||||    
T  3665847 ttaaggtcagggg-tgtatatagaaatatttggtttttgggaggtatatataa 3665796  T

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Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 416 - 541
Target Start/End: Complemental strand, 27941976 - 27941852
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||| |||||  |   |||||||||||||| |||||||||||    
T  27941976 cagggccggccctagggcataagccgcgagtgcgacggcctagggcccatgccggtagggggcccaaaaag-aatttaaggtaagggggtgtatatagaa 27941878  T
Q  516 atatttagattttggggggtatatat 541  Q
    |||||| ||||| |||||||||||||    
T  27941877 atatttggatttcggggggtatatat 27941852  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 19156736 - 19156861
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||| |||||    | |||||||||||||| |||||||||||    
T  19156736 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaa-aaatctttaaggtaagggggtgtatatagaa 19156834  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||| ||||| ||||||||    
T  19156835 atatttggatttcgggggatatatata 19156861  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 415 - 542
Target Start/End: Complemental strand, 53077431 - 53077303
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaa-ggggatgtatatag 513  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||| ||||| || ||||||| ||||| |  |||||||||||| |||| |||||||||    
T  53077431 gcagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccgatagggggcccaaaataatttttaaggtaaggggggtgtatatag 53077332  T
Q  514 aaatatttagattttggggggtatatata 542  Q
    |||||||| ||||| || |||||||||||    
T  53077331 aaatatttggatttcggagggtatatata 53077303  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 542
Target Start/End: Original strand, 15760509 - 15760627
Alignment:
Q  423 ggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaaatattta 522  Q
    |||||| || |||| ||||||||||||||||||||||| ||||| |||||||||  | |||||||||| |||||||||||| |||||||||||||||||     
T  15760509 ggcccttgggcataggccgcgagtgcgacggcctagggcccatgccggtaggggcccaaaattgtttt-taaggtaagggggtgtatatagaaatatttg 15760607  T
Q  523 gattttggggggtatatata 542  Q
    ||||| ||||||||| ||||    
T  15760608 gatttcggggggtatgtata 15760627  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 52447788 - 52447910
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    ||||| |||||||||| |||| ||||| ||||||||| ||||| | || || |||||||||| |||||||  ||||||||||| |||  ||| |||||||    
T  52447788 cagggacggccctagggcataggccgcaagtgcgacgacctagagcccttgccggtagggggcccaaatt--tttttaaggtagggg--tgtttatagaa 52447883  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| |||||| |||||||||||||    
T  52447884 atatttggattttagggggtatatata 52447910  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 416 - 545
Target Start/End: Original strand, 25071278 - 25071409
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtcc-aaattgttttttaaggtaaggggatgtatataga 514  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||| | |||||||||| || |||      |||||||||| ||| ||||||||||    
T  25071278 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccaagccggtagggggcccaaaaaaaaaatttaaggtaaaggggtgtatataga 25071377  T
Q  515 aatatttagattttggggg-gtatatataaaa 545  Q
    ||||||| ||||| ||||| ||||||| ||||    
T  25071378 aatatttggatttagggggtgtatatagaaaa 25071409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 512
Target Start/End: Complemental strand, 10994581 - 10994487
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatata 512  Q
    |||||||||||||||| |||| |||||||||||||||| |||||| ||||| ||| | |||| ||||||| ||||||||||||||| | ||||||||    
T  10994581 cagggccggccctagggcataggccgcgagtgcgacggtctagggcccatgccggca-ggggcccaaatt-ttttttaaggtaaggaggtgtatata 10994487  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 6025206 - 6025146
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||    
T  6025206 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtaggggg 6025146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 23045322 - 23045262
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  23045322 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 23045262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 31885395 - 31885335
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  31885395 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 31885335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 542
Target Start/End: Complemental strand, 24928248 - 24928177
Alignment:
Q  469 ggtagggggtccaaattgttttttaaggtaaggggatgtatatagaaatatttagattttggggggtatatata 542  Q
    |||||||||  |||||| |||||||| ||| |||  ||||||||||||||||| |||||| |||||||||||||    
T  24928248 ggtagggggatcaaatttttttttaaagtagggg--tgtatatagaaatatttggattttagggggtatatata 24928177  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 1424344 - 1424404
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    ||||||||||||||||| ||| |||| | |||||||||||||||| ||||| ||||||||||    
T  1424344 cagggccggccctaggt-ataggccgggggtgcgacggcctagggcccatgccggtaggggg 1424404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 30376917 - 30376993
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgtttttta 493  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||| |||||   |||||||| || |||| |||||||    
T  30376917 cagggccgaccctagg-cataggccgcgagtgcgacggcctagggcccatgctcgtagggggccctaattttttttta 30376993  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 460
Target Start/End: Original strand, 36640723 - 36640766
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctaggg 460  Q
    |||||||||||||||| |||| |||||||||||||||||||||||    
T  36640723 cagggccggccctagg-cataggccgcgagtgcgacggcctaggg 36640766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 1420253 - 1420204
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    |||||||||||||||| |||| || |||||||||||||||||||| |||||    
T  1420253 cagggccggccctagg-cataggctgcgagtgcgacggcctagggcccatg 1420204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 22917793 - 22917842
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatg 466  Q
    |||||||||||||||| |||| |||||||||| |||||||||||| |||||    
T  22917793 cagggccggccctagg-cataggccgcgagtgtgacggcctagggcccatg 22917842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 9467919 - 9467857
Alignment:
Q  413 gagcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtaggggg 477  Q
    ||||||||||||||||||| |||| |||| | |||||||||||||||| ||||| | ||||||||    
T  9467919 gagcagggccggccctagg-cataggccggg-gtgcgacggcctagggcccatgcccgtaggggg 9467857  T

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Target: scaffold0016 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 89517 - 89395
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||||||| | |||| ||| ||||||||||||||||||| || ||||||||||||| ||||||| |||||||||   | ||  |||||||| ||    
T  89517 cagggccggccctaaggcataggccccgagtgcgacggcctagggcccttgtcggtagggggcccaaatt-ttttttaag---atggagtgtatataaaa 89422  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||||||| ||||||||||    
T  89421 atatttggattttgggaggtatatata 89395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 88091 - 87968
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaagggga-tgtatataga 514  Q
    |||||||||| ||| | |||| ||||||||||||||||||||||| || |  |||||||||| |||||      ||||||  | ||||| |||||||| |    
T  88091 cagggccggcactaaggcataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaa--agaatttaag--atggggagtgtatataaa 87996  T
Q  515 aatatttagattttggggggtatatata 542  Q
    ||||||| ||||||||||||||||||||    
T  87995 aatatttggattttggggggtatatata 87968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 88567 - 88444
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||| ||| |  ||| ||||||||||||||||||||||| || |  |||||||||| |||||    |||  ||| |  |||| |||||||| ||    
T  88567 cagggccggcactaaggtataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaaagaattt--aagatgggggg-tgtatataaaa 88471  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||||||||||||||||||    
T  88470 atatttggattttggggggtatatata 88444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 89043 - 88920
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaattgttttttaaggtaaggggatgtatatagaa 515  Q
    |||||||||| ||| |  ||| ||||||||||||||||||||||| || |  |||||||||| |||||    |||  ||| |  |||| |||||||| ||    
T  89043 cagggccggcactaaggtataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaaagaattt--aagatgggggg-tgtatataaaa 88947  T
Q  516 atatttagattttggggggtatatata 542  Q
    |||||| ||||||||||||||||||||    
T  88946 atatttggattttggggggtatatata 88920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 6427 - 6495
Alignment:
Q  415 gcagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtccaaa 483  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| || || |||||||||| |||||    
T  6427 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtagggggcccaaa 6495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 40460 - 40535
Alignment:
Q  416 cagggccggccctaggtcatatgccgcgagtgcgacggcctagggtccatgtcggtagggggtcc-aaattgttttt 491  Q
    |||||||||||||||| |||| |||| | |||||||||||||||| ||||| |  ||||||| || |||||||||||    
T  40460 cagggccggccctagg-cataggccgggggtgcgacggcctagggcccatgccattagggggccctaaattgttttt 40535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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