View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391A-Insertion-5 (Length: 698)
Name: NF1391A-Insertion-5
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391A-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 8 - 698
Target Start/End: Complemental strand, 35801712 - 35801026
Alignment:
| Q |
8 |
acataataatcagttaagtaagtatannnnnnnn-gcaaattttatcatttatctttatgttatgtctttacttgtgcatttcttagtttagtggaatga |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35801712 |
acataataatcagttaagtaagtatatttttttttgcaaattttatcatttatctttatgttatatctttacttgtgcatttcttagtttagtggaatga |
35801613 |
T |
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| Q |
107 |
ctaaactatacccgagtacgcccgtggaaatgcatggtggtatatatatattccaaaagggtcgtttctctataagaaaataaaataagcgcgctttcaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35801612 |
ctaaactatacccgagtacgcccgtggaaatgcatggtggtatatat----tccaaaagggtcgtttctctataagaaaataaaataagcgcgctttcaa |
35801517 |
T |
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| Q |
207 |
gattctcatcatagcaacgtagaaaggtgttaatattttgtggcgaaccttgtgcgttatgactcttgaactaattggggaaacccaagtgctcaaagga |
306 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35801516 |
gattctcatcataacaacgtagaaaggtgttaatattttgtggcgaaccttgtgcgttatgactcttgaactaattggggaaacctaagtgctcaaagga |
35801417 |
T |
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| Q |
307 |
attggaagaaattatttcaatttcattgttgaataatgacttggattccaactttattaagtttaataatggaatttattataatcagtttctttatttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
35801416 |
attggaagaaattatttcaatttcattgttgaataatgacttggattccaactttattaattttaataatggaatttattataatcagtttctt-atttc |
35801318 |
T |
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| Q |
407 |
cccttctaagttctaattggcttttttggaatttaaaggattaatgttatatataacaaaaaggactgatcgatgtgaaagcaaagctagctagtttggt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35801317 |
cccttctaagttctaattggcttttttggaatttaaaggattaatgttatatataacaaaaaggactgatcgatgtgaaagcaaagctagctagtttggt |
35801218 |
T |
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| Q |
507 |
aagtttatctgatctgaaacatttagaacaatcttacgtgttggtattgattcttacctccatactcaagtaagtgggcatgttgtgatttttaggtaat |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35801217 |
aagtttatctgatctgaaacatttagaacaatcttacgtgttggtattgattcttacctccatactcaagtaagtgggcatgttgtgatttttaggtaat |
35801118 |
T |
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| Q |
607 |
aaattgaactataagcataaatttaattaagatgttaatttcactttttactataaagtatagcgatggtgaaattgtatttcaactttttt |
698 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35801117 |
gaattgaactataagcataaatttaattaagatgttaatttcactttttactataaagtatagcgatggtgaaattgtagttcaactttttt |
35801026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 3328009 - 3327965
Alignment:
| Q |
332 |
ttgttgaataatgacttggattccaactttattaagtttaataat |
376 |
Q |
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| T |
3328009 |
ttgttgaataatgacatggattccaactttattaagttgaataat |
3327965 |
T |
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