View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391A-Insertion-8 (Length: 721)
Name: NF1391A-Insertion-8
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391A-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 366 - 716
Target Start/End: Complemental strand, 50938904 - 50938554
Alignment:
| Q |
366 |
atcaaattgtctagtagttagaattaaactgaataaataagacgtttgaggttcgaattttatcttctacactgaatcatgctcatggagacgtgtggaa |
465 |
Q |
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| T |
50938904 |
atcaagttgtctagtagttagaatttaactgaataaataaggcgttcgagattcgaattttatcttctacactgaatcatgctcacggagacgtgtggaa |
50938805 |
T |
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| Q |
466 |
gttggggttgacaaatggtattggcctatatatcaatccaaaatgttatcggttaaattattgtatgtggtggcccttgaaacaaattcctttcgaacta |
565 |
Q |
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| T |
50938804 |
gttggggttgacaaatggtattggcctatatatcaaaccaaaatgttatcggttaaattattgtatgtggtggcccttgaaacaaattcctttcgaact- |
50938706 |
T |
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| Q |
566 |
atttatttatacaaaaacaaaatctctgtcaaaaaatacatctttgatgcacttatttaaaaaatcagtttaaagtatttgtgttgtactcgaattttgt |
665 |
Q |
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| T |
50938705 |
atttatttatacaaaaacaaaatctctgtcaaaaaatacatctttgatgcacttatttaaaaaatcagtttaaagtatttgtgttgtactcgaattttgt |
50938606 |
T |
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| Q |
666 |
ctgtccaattttttattttgtaatt-aaaaagagtaaataagcaatttcccc |
716 |
Q |
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| T |
50938605 |
ctgcccaattttttattttgtaattaaaaaagagtaaatagacaatttcccc |
50938554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 50939283 - 50938965
Alignment:
| Q |
7 |
accttatatatattatgcatcgttcttaccaattgaatcaagctcacttacacatacaagaaacaagtattgttgtagcagtaaactctcaaaagtaata |
106 |
Q |
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| T |
50939283 |
accttatatatattatgcattgttcttattaattgaatcaagctcacgtacacatacaaaaaacaagtattgttgtagcagtaaactctcaaaagtaata |
50939184 |
T |
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| Q |
107 |
aagaaacacagcaagctccaaaataaaactcgaacacaagactatccacgatgacaatatcaaccaccacaccgctgcaacataaaccccaaagaacctc |
206 |
Q |
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| T |
50939183 |
aagaaacacagcaagctccaaaataaaactcgaacacaagactatccacgatgacaatatcaaccaccacaccgctgcaacataaaccccaaagaacctc |
50939084 |
T |
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| Q |
207 |
ccacatgaaccccaaaacatcgcatttacaacacaatttcaattcaaacttcggattcaaaatcacctattaaaacaatcaataagatcccatccccaca |
306 |
Q |
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| T |
50939083 |
ccacatgaaccccaaaacatcgcatttacaacacaatttcaattcaaactgcggattcaaaatcacctattaaaacaatcaataagatcccatccccaca |
50938984 |
T |
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| Q |
307 |
taaaacctttttcttcttc |
325 |
Q |
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||||||||||||||||||| |
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| T |
50938983 |
taaaacctttttcttcttc |
50938965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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