View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391A-Insertion-9 (Length: 753)
Name: NF1391A-Insertion-9
Description: NF1391A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391A-Insertion-9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 716; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 8 - 753
Target Start/End: Original strand, 36870425 - 36871172
Alignment:
| Q |
8 |
tggcaaacatgcgatttcctacagttgttggcttatctggaattgatggaacctcaatgtccccttctagcatcttcaaagcatccaaaattgtgggcct |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36870425 |
tggcaaacatgcgatttcctacagttgttggcttatctggaattgatggaacctcaatgtccccttctagcatcttcaaagcatccaaaattgtgggcct |
36870524 |
T |
|
| Q |
108 |
taaagcaactactacatgacagcacaaaattccaaccatcaaaaatctctccattatgcttctagtggaatttccatccaataatatagaagcatccaaa |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36870525 |
taaagcaactactacatgacagcacaaaattccaaccatcaaaaatctctccattatgcttctagtggaatttccatccaataatatagaagcatccaaa |
36870624 |
T |
|
| Q |
208 |
gccttcgttgtgtttccagatttcatcaacgaccaaacccaatccgtgatcaagaaattaggctctccagacgaagacaactgaagagccttttttccac |
307 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36870625 |
gccttcattgtgtttccagatttcatcaacgaccaaacccaatccgtgatcaagaaattaggctctccagacgaagacaactgaagagccttttttccac |
36870724 |
T |
|
| Q |
308 |
acattatctcaagaacaaccacgccaaaactatagacatcactcttctcggttaactgaccataaagtgcatattctggagctagatatccacgagttcc |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36870725 |
acattatctcaagaacaaccacgccaaaactatagacatcactcttctcggttaactgaccataaagtgcatattctggagctagatatccacgagttcc |
36870824 |
T |
|
| Q |
408 |
ggctactctagtatttggctgagacatattttgactgtagtcctgtttcgccagcccgaaatctgcaacccttgctctcatacctgcatcaagtagtata |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36870825 |
ggctactctagtatttggctgagacatattttgactgtagtcctgtttcgccagcccgaaatctgcaacccttgctctcatacctgcatcaagtagtata |
36870924 |
T |
|
| Q |
508 |
ttggtagctttgatatctctgtgataaacaggaggcttaactccaaagtgcaaataaaccaacgcgttcgccacatccaagattatgtttttcctttgag |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36870925 |
ttggtagctttgatatctctgtgataaacaggaggcttaactccaaagtgcaaataaaccaacgcgttcgccacatccaagattatgttttttctttgag |
36871024 |
T |
|
| Q |
608 |
accaagtcaaagattgtttttca-ttttggttatccatttcaggaaaaagatggtctttaagactaccattcggcatataatcatagacaagatactttc |
706 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36871025 |
accaagtcaaagattgtttttcatttttggttatccatttcagggaaaagatggtctttaagactaccattcggcatataatcatagacaagatactttc |
36871124 |
T |
|
| Q |
707 |
caatgtactca-gattctcatcttcaccaacaacacaacatcctctta |
753 |
Q |
| |
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||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36871125 |
caaagtactcaggattctcatcttcaccaacaacacaacatcctctta |
36871172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 41 - 702
Target Start/End: Original strand, 36877042 - 36877706
Alignment:
| Q |
41 |
tatctggaattgatggaacctcaatgtccccttctagcatcttcaaagcatccaaaattgtgggccttaaagcaactactacatgacagcacaaaattcc |
140 |
Q |
| |
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|||||||||||| |||| ||||| || ||||||| ||||||||| |||||||||||||| |||||| || || ||| ||||||| | ||| |||||| |
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| T |
36877042 |
tatctggaattggctgaacttcaatatctccttctaacatcttcaatgcatccaaaattgttggccttgaatcagctattacatgagaagacagaattcc |
36877141 |
T |
|
| Q |
141 |
aaccatcaaaaatctctccattatg---cttctagtggaatttccatc---caataatatagaagcatccaaagccttcgttgtgtttccagatttcatc |
234 |
Q |
| |
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||||| |||||| ||||||||||| || ||| |||| |||||||| || || ||||||||||| ||||| | | | |||||| |||||||| |
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| T |
36877142 |
aaccagcaaaaacctctccattatattcctactattggattttccatcatccaccaagatagaagcatcgaaagcttctgctaggtttcctgatttcatt |
36877241 |
T |
|
| Q |
235 |
aacgaccaaacccaatccgtgatcaagaaattaggctctccagacgaagacaactgaagagccttttttccacacattatctcaagaacaaccacgccaa |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| || ||||||| || |||||| ||| |||||||||| ||||| | ||||||||| |||| |
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| T |
36877242 |
aacgaccaaacccaatccgtgatcaagaaattaggtgttcctgatgaagacacctcaagagcttttcttccacacataatctccaaaacaaccacaccaa |
36877341 |
T |
|
| Q |
335 |
aactatagacatcactcttctcggttaactgaccataaagtgcatattctggagctagatatccacgagttccggctactctagtatttggctgagacat |
434 |
Q |
| |
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| ||||||||||| |||||| |||||| ||||||||| |||||||||||||| || ||||||||| ||||| |||||||| |||||| |||| ||| | |
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| T |
36877342 |
agctatagacatcgctcttcccggttagctgaccatagagtgcatattctggggcaagatatccatatgttccagctactcttgtatttagctgcgacct |
36877441 |
T |
|
| Q |
435 |
attttgactgtagtcctgtttcgccagcccgaaatctgcaacccttgctctcatacctgcatcaagtagtatattggtagctttgatatctctgtgataa |
534 |
Q |
| |
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| ||| |||| || ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
36877442 |
actttcactgctttc---tttggccagcccgaaatctgcaacccttgctctcatatctgcaccaagtagtatattggtggctttgatatctctgtgataa |
36877538 |
T |
|
| Q |
535 |
acaggaggcttaactccaaagtgcaaataaaccaacgcgttcgccacatccaagattatgtttttcctttgagaccaagtcaaagattgtttttcatttt |
634 |
Q |
| |
|
| || ||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||| ||||||||| ||| | |||||||| |
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| T |
36877539 |
atagcaggtttaactccaaagtgcaaataaaccaacccacttgccacatccaagattatgttttttctttgaggccaagtcaacaatttctgttcatttt |
36877638 |
T |
|
| Q |
635 |
ggttatccatttcaggaaaaagatggtctttaagactaccattcggcatataatcatagacaagatac |
702 |
Q |
| |
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||| |||| | ||||| | ||| |||| ||| ||||||| |||||||||||||| ||||||||| |
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| T |
36877639 |
cgttgtccaatgatggaaagatatgatcttcaaggttaccatttggcatataatcataaacaagatac |
36877706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 291 - 601
Target Start/End: Complemental strand, 718676 - 718369
Alignment:
| Q |
291 |
aagagccttttttccacacattatctcaagaacaaccacgccaaaactatagacatcactcttctcggttaactgaccataaagtgcatattctggagct |
390 |
Q |
| |
|
||||||||| | |||||||||||||| | ||||||||| ||||| || || |||||||||||||| || | ||||||||| || |||||||| || ||| |
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| T |
718676 |
aagagccttcctaccacacattatctccaaaacaaccacaccaaagctgtatacatcactcttctcagtcagctgaccatagagcgcatattccggcgct |
718577 |
T |
|
| Q |
391 |
agatatccacgagttccggctactctagtatttggctgagacatattttgactgtagtcctgtttcgccagcccgaaatctgcaacccttgctctcatac |
490 |
Q |
| |
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|| ||||| |||||||||| ||||||||| | | |||||| | | || | | |||||||| || || ||||| ||||| ||||| |||||| |
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| T |
718576 |
aggtatccgtgagttccggccactctagtagtgagatgagactgaccctccct--actt-tgtttcgcaagaccaaaatcagcaactcttgccctcatat |
718480 |
T |
|
| Q |
491 |
ctgcatcaagtagtatattggtagctttgatatctctgtgataaacaggaggcttaactccaaagtgcaaataaaccaacgcgttcgccacatccaagat |
590 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||| |||| |||||| ||||| | || ||||||||||||| |
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| T |
718479 |
cttcatcaagtagtatattggtagctttgatatccctatgataaattgcaggcttaactccatagtgtaaataagccaacccttttcccacatccaagat |
718380 |
T |
|
| Q |
591 |
tatgtttttcc |
601 |
Q |
| |
|
||||||||||| |
|
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| T |
718379 |
tatgtttttcc |
718369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 718941 - 718815
Alignment:
| Q |
41 |
tatctggaattgatggaacctcaatgtccccttctagcatcttcaaagcatccaaaattgtgggccttaaagcaactactacatgacagcacaaaattcc |
140 |
Q |
| |
|
||||||||||| ||||| ||||| || ||||| | ||||||||||||||| ||||||| ||||| |||||||| | ||||||| | || | |||||| |
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|
| T |
718941 |
tatctggaatttgaggaacttcaatatcaccttccaacatcttcaaagcatcggaaattgttggcctcaaagcaaccattacatgagaacatagaattcc |
718842 |
T |
|
| Q |
141 |
aaccatcaaaaatctctccattatgct |
167 |
Q |
| |
|
||| | ||||| || ||||||||||| |
|
|
| T |
718841 |
aacaagtaaaaacctttccattatgct |
718815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 11845354 - 11845313
Alignment:
| Q |
494 |
catcaagtagtatattggtagctttgatatctctgtgataaa |
535 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
11845354 |
catcaagtagtatatttgtagatttgatatctctatgataaa |
11845313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 11850083 - 11850042
Alignment:
| Q |
494 |
catcaagtagtatattggtagctttgatatctctgtgataaa |
535 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
11850083 |
catcaagtagtatatttgtagatttgatatctctatgataaa |
11850042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 40598090 - 40598049
Alignment:
| Q |
494 |
catcaagtagtatattggtagctttgatatctctgtgataaa |
535 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
40598090 |
catcaagtagtatatttgtagatttgatatctctatgataaa |
40598049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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