View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1391R-Insertion-1 (Length: 935)
Name: NF1391R-Insertion-1
Description: NF1391R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391R-Insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 717; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 9 - 768
Target Start/End: Complemental strand, 45801397 - 45800637
Alignment:
| Q |
9 |
gaagatatcggtatggtgggatatagagaactgtcatgttcctaaaggctccgatccacatgcaattgcgcagaatatcagttcagcacttgttcgtatg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45801397 |
gaagatatcggtatggtgggatatagagaactgtcatgttcctaaaggctccgatccacatgcaattgcgcagaatatcagttcagcacttgttcgtatg |
45801298 |
T |
|
| Q |
109 |
aactattgtggtcccgtttccatctccgcctatggtgacaccactcgtatacccgcttctgtacagcacgcgctttcgagcaccggaatttcgcttaatc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45801297 |
aactattgtggtcccgtttccatctccgcctatggtgacaccactcgtatacctgcttctgtacagcacgcgctttctagcaccggaatttcgcttaatc |
45801198 |
T |
|
| Q |
209 |
atgttcccgccggtaacgaactcacttcgattctgttgaattttggaattgtgatttcagttatgatttatgaactgtcggtttttgatttctgcgattg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45801197 |
atgttcccgccggtaacgaactcacttcgattctgttgaattttggaattgtgatttcagttatgatttatgaactgtcggtttttgatttctgcgattg |
45801098 |
T |
|
| Q |
309 |
attcatttgttgattgatttatgcttgtatgagttcatttctgtgattgattactgaacttgttttgacgagaagcagcagcgtcgactgttattgaatt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
45801097 |
attcatttgttgattgatttatgcttgtatgagttcatttctgtgattgattactgaacttgttttgacgagaatcatcagcgtggactgttattgaatt |
45800998 |
T |
|
| Q |
409 |
aaaaagaattaaattctattgaatt-ttttctcagtacaaggtgatttgatttgaagcatgattttaaattgtgattgtggtcgaggttgatgtggctat |
507 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45800997 |
aaaaagaattaaattctgttgaatttttttctcagtacaaggtgatttgatttgaagcatgattttaaattgtgattgtggtcgaggttgatgtggctat |
45800898 |
T |
|
| Q |
508 |
tgtgataggagacattgtggctgttgcgatatgtgttgcggtaattgtgtgggaatttaattctgcataaaatattatagccctgacttattgcggtttt |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45800897 |
tgtgataggagacattgtggctgttgcgatatgtgttgcggtaattgtgcgggaatttaattctgcataaaatattatagccctgacttattgcggtttt |
45800798 |
T |
|
| Q |
608 |
tgcgatgtgtattgctgtaatttcgcgggattatatttatcatgtgatgcggcttgcaatctgtacggcctatatggtattaaaaatctgatttgtggaa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45800797 |
tgcgatgtgtattgctgtaatttcgcgggattatatttatcacgtgatgcggcttgcaatctgtacggcctatatggtattaaaaatctgatttgtggaa |
45800698 |
T |
|
| Q |
708 |
ttatctaatatttgttcacttgtttgcttcctttctcgaggctttgaggtgtaacgtaaac |
768 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45800697 |
ttatctcatatttgttcacttgtttgcttcctttctcgaggctttgaggtgtaacgtaaac |
45800637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 769 - 931
Target Start/End: Complemental strand, 45800676 - 45800509
Alignment:
| Q |
769 |
gtttgcttcctttctcgaggctttgaggtgtaacgcaaacaagtgaataaattttagataaacttggtacattttttgtgccgaagcttgatagcatg-a |
867 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45800676 |
gtttgcttcctttctcgaggctttgaggtgtaacgtaaacaagtgaacaaattttagataaacttggtacattttttgtgccgaagcttgatagcatgaa |
45800577 |
T |
|
| Q |
868 |
attttgaac-aattttagatgcatttgtgttcaga-ttttagaaac--gtgtatcaaatcacttgttt |
931 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
45800576 |
attttgaacaaattttagatacatttgtgttcagatttttagaaacatgtgtatcaaatcacttgttt |
45800509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University