View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391R-Insertion-10 (Length: 301)
Name: NF1391R-Insertion-10
Description: NF1391R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391R-Insertion-10 |
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| [»] chr5 (8 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 33865568 - 33865862
Alignment:
| Q |
7 |
caattttgtcattgctcacgttcaacaaactctcccaccacatggaagacagtgttgaattttcaagatatggttttgcagcacaatctccatcatcatt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| |
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| T |
33865568 |
caattttgtcattgctcacgttcaacaaactctcccaccacatggaagacagtgttggattttcaagatatggttgtgcagcactatcaccatcaccatt |
33865667 |
T |
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| Q |
107 |
aattggtagaatagtatctacttcactatcttttgcaccagtaccatcatttgttgagaccgtcactattggagtcacaaaattattatatttcccattt |
206 |
Q |
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| T |
33865668 |
aattggtagaatagtatctacttcactatcttttgcaacattaccatcatttgttgaaacagttactattggtgtcacaaaattattatatttcccattc |
33865767 |
T |
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| Q |
207 |
aaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttttcatgctttctttaggattttcattttctatcttttc |
301 |
Q |
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| T |
33865768 |
aaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagtttgcatgctttctttaggtttctcattttctttcttttc |
33865862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 33734160 - 33734279
Alignment:
| Q |
182 |
cacaaaattattatatttcccatttaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttttcatgctttctttagga |
281 |
Q |
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| T |
33734160 |
cacaaaattaacatgtttcctattcaaccatgatgaatgagttgaaaaaattcgaggttggggtttaataacttcatgagctttcattgtttccttaggt |
33734259 |
T |
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| Q |
282 |
ttttcattttctatcttttc |
301 |
Q |
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|| || |||||| ||||||| |
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| T |
33734260 |
ttctctttttctttcttttc |
33734279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 33762650 - 33762744
Alignment:
| Q |
207 |
aaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttttcatgctttctttaggattttcattttctatcttttc |
301 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||| ||| | || || |||||| ||||||| |
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| T |
33762650 |
aaccatggtgaatgagttgaaaaaattcgaggttgaggtttaataacttcatgtgttttcatagtttccttatgtttctctttttctttcttttc |
33762744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 33748641 - 33748751
Alignment:
| Q |
191 |
attatatttcccatttaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttttcatgctttctttaggattttcattt |
290 |
Q |
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||||| ||||||||| ||||| |||||||||| |||||||||| || ||||||||||||||||||||| ||| || |||| ||||| || || ||| |
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| T |
33748641 |
attatgtttcccattcaaccaaggtgaatgagttgaaaaagttaatggacgaggtttaataacttcatgagctttaataatttccttagggttatctttt |
33748740 |
T |
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| Q |
291 |
tctatcttttc |
301 |
Q |
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||| ||||||| |
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| T |
33748741 |
tctttcttttc |
33748751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 33679694 - 33679769
Alignment:
| Q |
207 |
aaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttt---tcatgctttctttag |
279 |
Q |
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| T |
33679694 |
aaccatagtgaatgagttgaaaaagttcgaggtcgaggcttgataacttcatgagatttgatcatgctttctttag |
33679769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 33698411 - 33698486
Alignment:
| Q |
207 |
aaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttt---tcatgctttctttag |
279 |
Q |
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| T |
33698411 |
aaccatagtgaatgagttgaaaaagttcgaggtcgaggcttgataacttcatgagatttgatcatgctttctttag |
33698486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 33904232 - 33904359
Alignment:
| Q |
159 |
gttgagaccgtcactattggagtcacaaaattattatatttcccatttaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcat |
258 |
Q |
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||||| |||| ||| ||||| |||||| | |||||| ||||| || ||| | |||| ||||| ||| ||||||||||||| ||||||||||| ||||| |
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| T |
33904232 |
gttgaaaccgccacaattggtgtcacattaatattatgtttccagttcaacgaaggtggatgagttgagaaagttcgaggtttaggtttaataatttcat |
33904331 |
T |
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| Q |
259 |
gagttttcatgctttctttaggattttc |
286 |
Q |
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| T |
33904332 |
gaactttcatggtttccttaggtttttc |
33904359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 33834761 - 33834871
Alignment:
| Q |
191 |
attatatttcccatttaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttttcatgctttctttaggattttcattt |
290 |
Q |
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||||| ||||||||| ||||| |||||||||| |||||||||| || ||||||| ||||||||||||| ||| || |||| ||||| || || ||| |
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| T |
33834761 |
attatgtttcccattcaaccaaggtgaatgagttgaaaaagttaatggacgaggtttgataacttcatgagctttaataatttccttagggttatctttt |
33834860 |
T |
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| Q |
291 |
tctatcttttc |
301 |
Q |
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||| ||||||| |
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| T |
33834861 |
tctttcttttc |
33834871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 148648 - 148737
Alignment:
| Q |
190 |
tattatatttcccatttaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttttcatgctttctttag |
279 |
Q |
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|||||| ||||||||| ||| | |||||||||| ||| |||||||||||||||||| |||||| ||||||| ||||||| |||| |||| |
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| T |
148648 |
tattatgtttcccattcaacgaaggtgaatgagttgagaaagttcgaggttgaggtctaataatttcatgaaatttcatggtttccttag |
148737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 114431 - 114351
Alignment:
| Q |
180 |
gtcacaaaattattatatttcccatttaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatga |
260 |
Q |
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||||||||| || || ||||| ||| ||||| || |||| || |||||||||| ||||||||||||||||||| |||||| |
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| T |
114431 |
gtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatga |
114351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 21305787 - 21305839
Alignment:
| Q |
241 |
gaggtttaataacttcatgagttttcatgctttctttaggattttcattttct |
293 |
Q |
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| T |
21305787 |
gaggtttaataacttcatgagctttcatggtttccttaggtttatcgttttct |
21305839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 5471412 - 5471324
Alignment:
| Q |
180 |
gtcacaaaattattatatttcccatttaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatgagttttcat |
268 |
Q |
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|||||||||||||| | |||| |||| ||||| | ||| |||| |||||||||| |||| |||||||||||||| |||| |||||| |
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| T |
5471412 |
gtcacaaaattattgtgtttcacattcaaccaagatgattgagttgaaaaagttataggtctaggtttaataacttggtgagctttcat |
5471324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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