View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391R-Insertion-2 (Length: 894)
Name: NF1391R-Insertion-2
Description: NF1391R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391R-Insertion-2 |
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| [»] chr8 (4 HSPs) |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 598 - 894
Target Start/End: Complemental strand, 20209097 - 20208801
Alignment:
| Q |
598 |
caatgggttattcttttccaccgctaaacctaatgaagcatccaagaaacttagctttcattttgaatcttcaaaagagattcaagttcaacatgatagc |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20209097 |
caatgggttattcttttccaccgctaaacctaatgaagcatccaagaaacttagctttcattttgaatcttcaaaagagattcaagttcaacatgatagc |
20208998 |
T |
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| Q |
698 |
aaagcaacagcaactttggagactgaaacgagtctcgagggaaccggtgggtcgacacacggtcatctccgaccttcaactcatattagagtttcatcag |
797 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20208997 |
aaagcaacagcaactttggagactgaaacgagtctcgagggaactggtgggtcgacacacggtcctctccgaccttcaactcatattagagtttcatcaa |
20208898 |
T |
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| Q |
798 |
gaatcgattatcaacccgacgtatgcaaagacttcaaggagaccggatattgtggctacggcgattcatgcaagtttttgcacgaccgaactgatta |
894 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20208897 |
gaatcgattatcaacccgacctatgcaaagacttcaaggagaccggatattgtggctacggcgattcatgcaagtttttgcacgaccgaactgatta |
20208801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 598 - 894
Target Start/End: Complemental strand, 20228805 - 20228509
Alignment:
| Q |
598 |
caatgggttattcttttccaccgctaaacctaatgaagcatccaagaaacttagctttcattttgaatcttcaaaagagattcaagttcaacatgatagc |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20228805 |
caatgggttattcttttccaccgctaaacctaatgaagcatccaagaaacttagctttcattttgaatcttcaaaagagattcaagttcaacatgatagc |
20228706 |
T |
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| Q |
698 |
aaagcaacagcaactttggagactgaaacgagtctcgagggaaccggtgggtcgacacacggtcatctccgaccttcaactcatattagagtttcatcag |
797 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20228705 |
aaagcaacagcaactttggagactgaaacgagtctcgagggaactggtgggtcgacacacggtcctctccgaccttcaactcatattagagtttcatcaa |
20228606 |
T |
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| Q |
798 |
gaatcgattatcaacccgacgtatgcaaagacttcaaggagaccggatattgtggctacggcgattcatgcaagtttttgcacgaccgaactgatta |
894 |
Q |
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| T |
20228605 |
gaatcgattatcaacccgacctatgcaaagacttcaaggagaccggatattgtggctacggcgattcatgcaagtttttgcacgaccgaactgatta |
20228509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 20209158 - 20209095
Alignment:
| Q |
7 |
cacattttactattattaaatgaaaaacagggctccaattgggccataggtgctacaaatacaa |
70 |
Q |
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| T |
20209158 |
cacattttactattattaaatgaaaaactgggcttcaattgggccataggtgctacaaatacaa |
20209095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 20228866 - 20228803
Alignment:
| Q |
7 |
cacattttactattattaaatgaaaaacagggctccaattgggccataggtgctacaaatacaa |
70 |
Q |
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| T |
20228866 |
cacattttactattattaaatgaaaaactgggcttcaattgggccataggtgctacaaatacaa |
20228803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 598 - 894
Target Start/End: Complemental strand, 44293609 - 44293313
Alignment:
| Q |
598 |
caatgggttattcttttccaccgctaaacctaatgaagcatccaagaaacttagctttcattttgaatcttcaaaagagattcaagttcaacatgatagc |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44293609 |
caatgggttattcttttccaccgctaaacctaatgaagcatccaagaaacttagctttcattttgaatcttcaaaagagattcaagttcaacatgatagc |
44293510 |
T |
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| Q |
698 |
aaagcaacagcaactttggagactgaaacgagtctcgagggaaccggtgggtcgacacacggtcatctccgaccttcaactcatattagagtttcatcag |
797 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44293509 |
aaagcaacagcaactttggagactgaaacgagtctcgagggaactggtgggtcgacacacggtcctctccgaccttcaactcatattagagtttcatcaa |
44293410 |
T |
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| Q |
798 |
gaatcgattatcaacccgacgtatgcaaagacttcaaggagaccggatattgtggctacggcgattcatgcaagtttttgcacgaccgaactgatta |
894 |
Q |
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| T |
44293409 |
gaatcgattatcaacccgacctatgcaaagacttcaaggagaccggatattgtggctacggcgattcatgcaagtttttgcacgaccgaactgatta |
44293313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 712 - 894
Target Start/End: Complemental strand, 44484722 - 44484539
Alignment:
| Q |
712 |
tttggagactgaaacgagtctcgagggaaccggtgggtcgacacacggtcatctccgaccttcaactcatattagagtttcatcaggaatcgattatcaa |
811 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44484722 |
tttggagactgaaacgagtctcgagggaaccggtgggttgacacacggtcctctccgaccttcaactcatattagagtttcatcaagaatcgattatcaa |
44484623 |
T |
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| Q |
812 |
cccgacgtatgcaaagacttcaaggagaccggatattgtggc-tacggcgattcatgcaagtttttgcacgaccgaactgatta |
894 |
Q |
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| T |
44484622 |
cccgacctatgcaaagacttcaaggagactggatattgtggcatacaacgattcatgtaagtttttgcacgaccgaaccgatta |
44484539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 620 - 723
Target Start/End: Original strand, 44662984 - 44663087
Alignment:
| Q |
620 |
gctaaacctaatgaagcatccaagaaacttagctttcattttgaatcttcaaaagagattcaagttcaacatgatagcaaagcaacagcaactttggaga |
719 |
Q |
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|||||||| ||||||| ||| |||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662984 |
gctaaaccgaatgaagaatctgagaaacctagctttcatttcgagtcttctaaagagattcaagttcaacatgatagcaaagcaacagcaactttggaga |
44663083 |
T |
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| Q |
720 |
ctga |
723 |
Q |
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|||| |
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| T |
44663084 |
ctga |
44663087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 44293670 - 44293607
Alignment:
| Q |
7 |
cacattttactattattaaatgaaaaacagggctccaattgggccataggtgctacaaatacaa |
70 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
44293670 |
cacattttactattattaaatgaaaaactgggcttcaattgggccataggtgctacaaatacaa |
44293607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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