View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391R-Insertion-3 (Length: 847)
Name: NF1391R-Insertion-3
Description: NF1391R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391R-Insertion-3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 372 - 847
Target Start/End: Complemental strand, 32482754 - 32482279
Alignment:
| Q |
372 |
cataattctaaattacctctgtaagatgaaacatcatcgtttttgttgtaccaaaatagtgtctcttgtggtggaatatggccttgttgttgtgattctt |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32482754 |
cataattctaaattacctctgtaagatgaaacatcatcgtttttgttgtaccaaaatagtgtctcttgtggtggaatatgaccttgttgttgtgattctt |
32482655 |
T |
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| Q |
472 |
ctccttggtttcctcttccacctccacctaatgagaacaaaccagccatttctttgaagnnnnnnnccttaaccctaacaacaatagtttctttaattgt |
571 |
Q |
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| T |
32482654 |
ctccttggtttcctcttccacctcctcctaatgagaacaaaccagccatttctttgaagaaaaaaaccttaaccctaacaacaatactttctttaattgt |
32482555 |
T |
|
| Q |
572 |
gtctcaatttccatatcaaaaacctaaataggnnnnnnnnnnnnggtacaaagaacatgagaaatcaagaaacagttgagagagaattaattgggatttg |
671 |
Q |
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| T |
32482554 |
gtctcaatttccatatcaaaaacctaaataggttttttgtttttggtacaaagaacatgagaaatcaagaaacagttgagagagaattaattgggatttg |
32482455 |
T |
|
| Q |
672 |
tgaaaaatggtttatgggataccgtgttttgtgtgcgtctccagaaaattacacaaaacaaaacacagagaaaatgaaaacataagtatatgtctccttg |
771 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482454 |
tgaaaaatggtttatgggataccgtgttttgtgtgcgtctccagaaaattacacaaaacaaaacacagagaaaatgaaaacataagtatatgtctccttg |
32482355 |
T |
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| Q |
772 |
ttatggttgggaaaagagtatagtaattgaattgaattgaagttaataagaaaaagaaggacagaaaacagaaaca |
847 |
Q |
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| T |
32482354 |
ttatggttgggaaaagagtatagtaattgaattgaattgaagttaataagaaaaagaaggacagaaaacagaaaca |
32482279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 32483118 - 32482792
Alignment:
| Q |
8 |
agaagataactgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32483118 |
agaagataactgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaacaagtt |
32483019 |
T |
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| Q |
108 |
ctacatctcatgtgaggacaatctttcttagcttggttaccacaatcttgacaacttatcccttcagctgaagaagaagacctcatcgccatagtaaacg |
207 |
Q |
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| T |
32483018 |
ctacatctcatgtgaggacaatctttcttagcttggttaccacaatcttgacaacttatcccttcagctgaagaagaagacctcatcgccatagtaaacg |
32482919 |
T |
|
| Q |
208 |
ccgccgatctcgacgacgattgatgttcatgatcatctgatgaaaccctgcttggtccaacacctaaaccaactcctggaccgtagagatctcgcgggaa |
307 |
Q |
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| T |
32482918 |
ccgccgatctcgacgacgattgatgttcatgatcatctgatgaaaccctgcttggtccaacacctaaaccaactcctggaccgtagagatctcgcgggaa |
32482819 |
T |
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| Q |
308 |
gaacggccgtgcagcatgcatatcatc |
334 |
Q |
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| T |
32482818 |
gaacggccgtgcagcatgcatatcatc |
32482792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 8102004 - 8101876
Alignment:
| Q |
38 |
tctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctcatgtgaggacaatctttctta |
137 |
Q |
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||||| ||||||||||||||| || ||||||||||||||||| | ||| || | ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8102004 |
tctagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttctta |
8101905 |
T |
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| Q |
138 |
gcttggttaccacaatcttgacaacttat |
166 |
Q |
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| T |
8101904 |
gcttgattcccacaatcttgacaacttat |
8101876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 7418510 - 7418652
Alignment:
| Q |
18 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctca |
117 |
Q |
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| T |
7418510 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
7418609 |
T |
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| Q |
118 |
tgtgaggacaatctttcttagcttggttaccacaatcttgaca |
160 |
Q |
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| T |
7418610 |
gatgtggacaatctttcttagcttggttaccacaatcttgaca |
7418652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 52767556 - 52767699
Alignment:
| Q |
18 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctca |
117 |
Q |
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|||||||| |||||||||||| ||| ||| ||||||||||| || |||||||| |||||||||||||| || ||||| |||||||||||||| ||||| | |
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| T |
52767556 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacactgaaaccctcgacttttacaacaagttctgcatctta |
52767655 |
T |
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| Q |
118 |
tgtgaggacaatctttcttagcttggttaccacaatcttgacaa |
161 |
Q |
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|| |||||||||||| |||||||||||||| || |||||| |
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| T |
52767656 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaa |
52767699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 732
Target Start/End: Complemental strand, 11308535 - 11308502
Alignment:
| Q |
699 |
tttgtgtgcgtctccagaaaattacacaaaacaa |
732 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
11308535 |
tttgtgtgcgtctccagaaaattccacaaaacaa |
11308502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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