View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1391R-Insertion-4 (Length: 530)
Name: NF1391R-Insertion-4
Description: NF1391R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391R-Insertion-4 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Original strand, 34485029 - 34485551
Alignment:
| Q |
9 |
gcaaattaaagggataatgctgaggcatgtcaaagtattgcaaatgtgaaatatggttcatcaagcattagaacattatga-ttattcagatttatcgaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
34485029 |
gcaaattaaagggataatgctgaggcatgtcaaagtattgcaaatgtgaaatatggttcatcaagcattagaacattatgaattattcaaatttatcgaa |
34485128 |
T |
|
| Q |
108 |
gtaaggtttattgtttactaaaagccacgatttcaatgaaaaaatatgcacaaaagcgaaaacatttaaattatttggggtctgtttggtaagacannnn |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
34485129 |
gtaaggtttattgtttactaaaagccacgatttcaatgaaaaaatatgcacaaaagcaaaaacatttaaactatttggggtctatttggtaagacatttt |
34485228 |
T |
|
| Q |
208 |
nnngagcttataatatataagctatgtcttacaagttcatttaagtaaaatagacttggcaagacattttttgagcttataattatagttaacgtcttgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
34485229 |
tttgagcttataatatataagctatgtcttacaagttcatttaagtaaaatagacttggcaagacattttttgagcttataattatagtttatgtcttgt |
34485328 |
T |
|
| Q |
308 |
aaatttatttaactagaatagactcctttgatagacttggcaagaagtgtataatcattttttgtgaataactcttgagttttttctccatctttcaaca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34485329 |
aaatttatttaactagaatagactcctttgatagacttggcaagaagtgtataatcgttttttgtgaataactcttgagttttttctccatcttccaaca |
34485428 |
T |
|
| Q |
408 |
tagactcaatcggtgtttcatgtgcataacgagtaaactctccaccttatatattcatttgaggtctataaaatatgttgggattggttggcggagatag |
507 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34485429 |
tagactcgatcagtgtttcatgtgcataacgagtaaactcttcaccttagatattcatttgaggtctataaaacatgttgggattggttggcggagatag |
34485528 |
T |
|
| Q |
508 |
aaacctgatgactttgtttttgg |
530 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34485529 |
aaacctgatgactttgtttttgg |
34485551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 392 - 528
Target Start/End: Original strand, 34491089 - 34491225
Alignment:
| Q |
392 |
tctccatctttcaacatagactcaatcggtgtttcatgtgcataacgagtaaactctccaccttatatattcatttgaggtctataaaatatgttgggat |
491 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||| || |||||| |||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
34491089 |
tctccatctttcgacgtagactcaatcagtgtttcaagttcataaccagtaaactctccaccttagatatccatttgaggtctataaaacatgttgggat |
34491188 |
T |
|
| Q |
492 |
tggttggcggagatagaaacctgatgactttgttttt |
528 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| || ||||| |
|
|
| T |
34491189 |
tggttgacggaggtagaaacatgatgacctttttttt |
34491225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 340
Target Start/End: Original strand, 34496404 - 34496509
Alignment:
| Q |
234 |
tcttacaagttcatttaagtaaaatagacttggcaagacattttttgagcttataattatagttaacgtc-ttgtaaatttatttaactagaatagactc |
332 |
Q |
| |
|
||||| ||||| |||||| ||||||||||| ||| ||||||||||||| |||||||||||||| ||| || ||| | |||||||||||||||||||| |
|
|
| T |
34496404 |
tcttataagtttatttaacaaaaatagactttgcatgacattttttgagtttataattatagtt--tgtctttataagtatatttaactagaatagactc |
34496501 |
T |
|
| Q |
333 |
ctttgata |
340 |
Q |
| |
|
|||||||| |
|
|
| T |
34496502 |
ctttgata |
34496509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 498
Target Start/End: Original strand, 34492665 - 34492742
Alignment:
| Q |
420 |
gtgtttcatgtgcataacgagtaaactctccaccttatatattcatttgaggtctataaaatatgttgggattggttgg |
498 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||| ||| ||| || |||||||||||| |||||||| |||||||| |
|
|
| T |
34492665 |
gtgtttcatgttcataacgaataaactatccaccttagata-tcaatttaggtctataaaacatgttggggttggttgg |
34492742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 501
Target Start/End: Original strand, 16561051 - 16561131
Alignment:
| Q |
421 |
tgtttcatgtgcataacgagtaaactctccaccttatatattcatttgaggtctataaaatatgttgggattggttggcgg |
501 |
Q |
| |
|
||||||| || |||||| |||||||||||||| || | ||| | || |||||||||||||||||||||| || |||||||| |
|
|
| T |
16561051 |
tgtttcaggttcataacaagtaaactctccactttgtgtatcccttggaggtctataaaatatgttggggttagttggcgg |
16561131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 461
Target Start/End: Original strand, 34483368 - 34483424
Alignment:
| Q |
405 |
acatagactcaatcggtgtttcatgtgcataacgagtaaactctccaccttatatat |
461 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
34483368 |
acatagatccaatcggtgtttcatgttcataacgagtaaactctctaccttagatat |
34483424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 34486508 - 34486597
Alignment:
| Q |
109 |
taaggtttattgtttactaaaagccacgatttcaatgaaaaaatatgcacaaaagcgaaaacatttaaattatttggggtctgtttggtaaga |
201 |
Q |
| |
|
||||||||||||| ||| || ||||||||| |||||||||||| ||| || ||||||||||||||| |||||||||| | ||||| |||| |
|
|
| T |
34486508 |
taaggtttattgtgtacgaa--gccacgatt-caatgaaaaaattggcaaaagtgcgaaaacatttaaactatttggggtgtatttggcaaga |
34486597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 489
Target Start/End: Complemental strand, 6212549 - 6212465
Alignment:
| Q |
405 |
acatagactcaatcggtgtttcatgtgcataacgagtaaactctccaccttatatattcatttgaggtctataaaatatgttggg |
489 |
Q |
| |
|
|||||| |||||| ||||||||| || ||||| ||||||||||||||| || | ||| |||| ||||| ||||||||||||||| |
|
|
| T |
6212549 |
acataggctcaattggtgtttcaggttcataatgagtaaactctccactttgtgtatcaattttaggtcgataaaatatgttggg |
6212465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 7108665 - 7108713
Alignment:
| Q |
432 |
cataacgagtaaactctccaccttatatattcatttgaggtctataaaa |
480 |
Q |
| |
|
||||||||||||||||||||| || | ||| |||||||||||||||||| |
|
|
| T |
7108665 |
cataacgagtaaactctccactttgtgtatccatttgaggtctataaaa |
7108713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 498
Target Start/End: Complemental strand, 9776281 - 9776197
Alignment:
| Q |
414 |
caatcggtgtttcatgtgcataacgagtaaactctccaccttatatattcatttgaggtctataaaatatgttgggattggttgg |
498 |
Q |
| |
|
|||| ||||||||| || ||||| ||||||| ||| ||| ||| |||| |||||||||||| ||||||||| ||| || ||||| |
|
|
| T |
9776281 |
caattggtgtttcaggttcataatgagtaaattctacactttaggtattaatttgaggtctacaaaatatgtcggggttagttgg |
9776197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University