View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391R-Insertion-5 (Length: 395)
Name: NF1391R-Insertion-5
Description: NF1391R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391R-Insertion-5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 40380974 - 40380588
Alignment:
| Q |
9 |
cttctttgccagaaatcgcttcatatcaatttcagcatatgctgaaaaggttatttagaaaatccttcttgctagcaatacatcatcattgttcnnnnnn |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40380974 |
cttctttgccagaaatcgcttcatatcaatttcagcatatgctgaaaaagttatttagaaaatccttcttgctagcaatacaccatcattgttctttttt |
40380875 |
T |
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| Q |
109 |
ncgtatgaagcgagatcgacattagaatctgccaaatgaacaaagacaacaatgtaggaagtatcattagcccttaatcaacgatcacattgaagttttt |
208 |
Q |
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| T |
40380874 |
tcgtatgaagcgagatcgacattagaatctgccaaatgaacaaagacaacaatgtaggaagtatcattagcccttaatcaacgatcacattgaagttttt |
40380775 |
T |
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| Q |
209 |
attgtaagttctcactttaaaaatgttcaaccagaagacttaacaaaagaagacagcatccaaatgaggataaaaactaaggacagtcttagatcaataa |
308 |
Q |
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| T |
40380774 |
attgtaagttctcactttaaaaatgttcaaccagaagacttaacaaaagaagacagcatccaaatgaggataaaaactaaggacagtcttagatcaataa |
40380675 |
T |
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| Q |
309 |
tgttctatcatgcttgagatcaaccaaccaatccactattatgtaacaacacaattattagcaacattgtttcgagaaacagctgca |
395 |
Q |
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| T |
40380674 |
tgttctatcatgcttgagatcaaccaaccaatccactattatgtaacaacacaattattagcaacattgtttcgagaaacagctgca |
40380588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 395
Target Start/End: Complemental strand, 40392027 - 40391929
Alignment:
| Q |
297 |
ttagatcaataatgttctatcatgcttgagatcaaccaaccaatccactattatgtaacaacacaattattagcaacattgtttcgagaaacagctgca |
395 |
Q |
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| T |
40392027 |
ttagatcaataatgttctatcatgctttaggtcaaccaaccaattcattattatgtaacaacacaattgttggcaacattgtttcgagaaacagctgca |
40391929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 41054410 - 41054514
Alignment:
| Q |
291 |
acagtcttagatcaataatgttctatcatgcttgagatcaaccaaccaatccactattatgtaacaacacaattattagcaacattgtttcgagaaacag |
390 |
Q |
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|||| ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || || |
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| T |
41054410 |
acaggcttagatcaataatgttctctcatgcttcaggtcaaccaaccaatccactattatgtaacaacacaattattggcaacattgttttgagcaaaag |
41054509 |
T |
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| Q |
391 |
ctgca |
395 |
Q |
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| T |
41054510 |
ctgca |
41054514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 40392322 - 40392197
Alignment:
| Q |
44 |
catatgctgaaaaggttatttagaaaatccttcttgctagcaatacatcatcattgttc-nnnnnnncgtatgaag----cgagatcgacattagaatct |
138 |
Q |
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| T |
40392322 |
catatgctgaaaaagttatgtagaaaatcctgcttactagcaatacacaatcattgctctttttttttgtatgaagtgatcgagatcgacattagactct |
40392223 |
T |
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| Q |
139 |
gccaaatgaacaaagacaacaatgtag |
165 |
Q |
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||| | ||||||||||||||||||||| |
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| T |
40392222 |
gcc-attgaacaaagacaacaatgtag |
40392197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 41052219 - 41052294
Alignment:
| Q |
217 |
ttctcactttaaaaatgttcaaccagaagacttaacaaaagaagacagcatccaaatgaggataaaaactaaggacagt |
295 |
Q |
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||||||||||| ||| |||||||||||||||||||| |||||| |||| ||| ||| ||||||||| | |||||||| |
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| T |
41052219 |
ttctcactttagaaaagttcaaccagaagacttaaccaaagaa---agcacccacatgtggataaaaattcaggacagt |
41052294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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