View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1391R-Insertion-6 (Length: 394)

Name: NF1391R-Insertion-6
Description: NF1391R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1391R-Insertion-6
NF1391R-Insertion-6
[»] chr1 (19 HSPs)
chr1 (9-362)||(37939279-37939632)
chr1 (247-362)||(37940099-37940214)
chr1 (249-362)||(37939921-37940034)
chr1 (249-361)||(37939966-37940078)
chr1 (249-362)||(37940011-37940124)
chr1 (249-362)||(37940056-37940169)
chr1 (263-362)||(37939890-37939989)
chr1 (265-362)||(37939847-37939944)
chr1 (248-361)||(37940145-37940258)
chr1 (249-362)||(37940236-37940349)
chr1 (248-360)||(37939563-37939675)
chr1 (251-362)||(37940283-37940394)
chr1 (247-325)||(37940324-37940402)
chr1 (253-362)||(37940195-37940304)
chr1 (249-334)||(37939741-37939826)
chr1 (247-336)||(37940369-37940458)
chr1 (249-362)||(37939654-37939764)
chr1 (249-362)||(37939786-37939899)
chr1 (249-350)||(37939699-37939797)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 37939279 - 37939632
Alignment:
Q  9 tcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgtacttagtctctttcagtatcgctgcct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37939279 tcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgctgcct 37939378  T
Q  109 caaattctaattctcttgacttttcttctacagcaatgaaatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttccct 208  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939379 caaattctaattctcttgacttttcttctacagcaatgacatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttccct 37939478  T
Q  209 tcgttccgttgaatgttgttctggttctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagcc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939479 tcgttccgttgaatgttgttctggttctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagcc 37939578  T
Q  309 acgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttct 362  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939579 acaggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttct 37939632  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 247 - 362
Target Start/End: Original strand, 37940099 - 37940214
Alignment:
Q  247 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttc 346  Q
    |||||||||||||  ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||    
T  37940099 cctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttc 37940198  T
Q  347 agtagccacaggttct 362  Q
    |||||| | |||||||    
T  37940199 agtagctagaggttct 37940214  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 37939921 - 37940034
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    |||||||||||| |||||| |||  ||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  37939921 tcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag 37940020  T
Q  349 tagccacaggttct 362  Q
    ||||||| ||||||    
T  37940021 tagccactggttct 37940034  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 249 - 361
Target Start/End: Original strand, 37939966 - 37940078
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    |||||||||||| |||| |||||  ||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  37939966 tcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag 37940065  T
Q  349 tagccacaggttc 361  Q
    ||||  |||||||    
T  37940066 tagctgcaggttc 37940078  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 37940011 - 37940124
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    |||||||||||| |||| |||||  ||||||||||||||||||  ||||||||||||||  | ||||| |||||||||||||||||||| | ||||||||    
T  37940011 tcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcag 37940110  T
Q  349 tagccacaggttct 362  Q
    | ||||||||||||    
T  37940111 ttgccacaggttct 37940124  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 37940056 - 37940169
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    |||||||||||| |  |||||||  ||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||  | ||||||||    
T  37940056 tcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcag 37940155  T
Q  349 tagccacaggttct 362  Q
    ||||||| ||||||    
T  37940156 tagccacgggttct 37940169  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 37939890 - 37939989
Alignment:
Q  263 cacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttct 362  Q
    |||||||||  ||||||| ||||||||||  ||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  37939890 cacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttct 37939989  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 265 - 362
Target Start/End: Original strand, 37939847 - 37939944
Alignment:
Q  265 caggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttct 362  Q
    |||||||| |||||||  ||||||||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  37939847 caggttcatcttttaccatttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattct 37939944  T

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Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 361
Target Start/End: Original strand, 37940145 - 37940258
Alignment:
Q  248 ctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttca 347  Q
    ||||||||||||| |||| |||||  ||||||||||||||||||  ||| |||||||||| |  |||||||||||||||||||||||||  | |||||||    
T  37940145 ctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttca 37940244  T
Q  348 gtagccacaggttc 361  Q
    ||| ||||||||||    
T  37940245 gtaaccacaggttc 37940258  T

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Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 37940236 - 37940349
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    |||||||||||||||||||||||  ||||||| |||||||||  || ||||||||||||  | |||||||||||||| ||||| ||||| | ||||||||    
T  37940236 tcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcag 37940335  T
Q  349 tagccacaggttct 362  Q
    |||||||| |||||    
T  37940336 tagccacaagttct 37940349  T

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Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 37939563 - 37939675
Alignment:
Q  248 ctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttca 347  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||  | ||||||||||||||| ||||||||||||||| ||||| |||  | |||||||    
T  37939563 ctcaacttcagtagccacaggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttaccatttctctaggatcaacttca 37939662  T
Q  348 gtagccacaggtt 360  Q
    ||| |||||||||    
T  37939663 gtaaccacaggtt 37939675  T

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Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 362
Target Start/End: Original strand, 37940283 - 37940394
Alignment:
Q  251 aacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagta 350  Q
    |||||||||| |  |||||||  ||||||||||||| |||| ||||||||||||||||||  ||||||||||||  ||||||||||| | ||||||||||    
T  37940283 aacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagta 37940382  T
Q  351 gccacaggttct 362  Q
     |||| ||||||    
T  37940383 accacgggttct 37940394  T

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Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 37940324 - 37940402
Alignment:
Q  247 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttac 325  Q
    |||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  37940324 cctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttac 37940402  T

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Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 37940195 - 37940304
Alignment:
Q  253 cttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagc 352  Q
    |||||||| | | ||||||  ||||||| ||||||||||| |||||||||||| |||| ||||| |||||||| ||||||||| | | ||||||||||||    
T  37940195 cttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagc 37940294  T
Q  353 cacaggttct 362  Q
      ||||||||    
T  37940295 tgcaggttct 37940304  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 37939741 - 37939826
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgt 334  Q
    |||||||| ||| |||||| |||  |||||||||| |||||||| |||||||||||| | |  ||||| |||||||||||||||||    
T  37939741 tcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtcttttaccgtttctgt 37939826  T

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Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 37940369 - 37940458
Alignment:
Q  247 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtag 336  Q
    ||||||||||||||||||| |||||  |||||||| | |||| || | ||||||| ||| ||| |||||||||||| || ||||||||||    
T  37940369 cctcaacttcagtaaccacgggttcttcttttactatctctgcagtcgcaacttcggtaaccatgggttcttctttcactgtttctgtag 37940458  T

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Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 37939654 - 37939764
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    ||||||||||||||||||||||   ||||||||| ||||||  | |||||||||||| ||| |||   ||||||||| |||| ||||  || |||||| |    
T  37939654 tcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccagggg---ttcttttactgtttttgtaatttcaacttctg 37939750  T
Q  349 tagccacaggttct 362  Q
    ||||||||| ||||    
T  37939751 tagccacagcttct 37939764  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 37939786 - 37939899
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    |||||||||||||| | ||||||  ||||||| |||||||| | ||| | |||||||||  | ||||| ||||||||| |||||||||  | |||| |||    
T  37939786 tcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctcaactacag 37939885  T
Q  349 tagccacaggttct 362  Q
    | | ||||||||||    
T  37939886 ttgtcacaggttct 37939899  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 37939699 - 37939797
Alignment:
Q  249 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 348  Q
    ||||||||||||||||  |||||   ||||||||||| ||||   |||||||| |||||||| | |||||||||||| || |||||||  | ||||||||    
T  37939699 tcaacttcagtaaccaggggttc---ttttactgtttttgtaatttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcag 37939795  T

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