View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1391R-Insertion-7 (Length: 359)

Name: NF1391R-Insertion-7
Description: NF1391R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1391R-Insertion-7
NF1391R-Insertion-7
[»] scaffold0316 (2 HSPs)
scaffold0316 (25-218)||(6653-6847)
scaffold0316 (293-358)||(6513-6578)
[»] chr6 (2 HSPs)
chr6 (25-218)||(11974107-11974299)
chr6 (293-359)||(11974374-11974439)
[»] scaffold0003 (4 HSPs)
scaffold0003 (28-168)||(191524-191656)
scaffold0003 (293-359)||(191374-191440)
scaffold0003 (26-168)||(181694-181838)
scaffold0003 (26-168)||(188634-188778)
[»] chr3 (4 HSPs)
chr3 (28-168)||(11818504-11818636)
chr3 (25-174)||(41758367-41758515)
chr3 (293-359)||(11818354-11818420)
chr3 (26-168)||(11374486-11374630)
[»] chr8 (2 HSPs)
chr8 (25-174)||(33856385-33856533)
chr8 (25-111)||(14106634-14106720)
[»] chr4 (3 HSPs)
chr4 (25-174)||(31926536-31926684)
chr4 (26-89)||(37525368-37525431)
chr4 (25-95)||(14289268-14289338)
[»] chr5 (4 HSPs)
chr5 (26-89)||(2255887-2255950)
chr5 (26-168)||(3698162-3698306)
chr5 (26-168)||(3695800-3695944)
chr5 (26-168)||(3870844-3870988)
[»] chr1 (2 HSPs)
chr1 (26-89)||(28968299-28968362)
chr1 (25-174)||(16046707-16046857)
[»] scaffold0012 (1 HSPs)
scaffold0012 (26-89)||(55284-55347)
[»] scaffold0796 (1 HSPs)
scaffold0796 (26-168)||(8-152)
[»] scaffold0356 (1 HSPs)
scaffold0356 (25-111)||(4058-4144)
[»] scaffold1940 (1 HSPs)
scaffold1940 (120-168)||(471-519)
[»] scaffold0281 (1 HSPs)
scaffold0281 (120-168)||(22365-22413)


Alignment Details
Target: scaffold0316 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 6847 - 6653
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatctctactata 124  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||  ||||    
T  6847 gtgattgcttcatacatgttggctataaatattgtgtttgaggctcacactttttacaccattttaagttacaactcacaattttcatttcactgttata 6748  T
Q  125 cattgtgc-tttttggtttcaacattctcactcaatttcgagattaatgcttttttgtttcaacattctaactcaatttcgagattcatactaaa 218  Q
    |||||| | |||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6747 cattgtacttttttgttttcaacattctcactcaatttcgagattcatgctttttggtttcaacattctaactcaatttcgagattcatactaaa 6653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 293 - 358
Target Start/End: Complemental strand, 6578 - 6513
Alignment:
Q  293 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaactt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6578 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaactt 6513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 11974107 - 11974299
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatctctactata 124  Q
    |||||||||||||||||||| ||||||| |||||   || |||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||    
T  11974107 gtgattgcttcatacatgtttgctataa-tattggtattgaggctcacactttttacaccattttaagttacaactcacaattttcatatcactgctata 11974205  T
Q  125 cattgtgctttttggtttcaacattctcactcaatttcgagattaatgcttttttgtttcaacattctaactcaatttcgagattcatactaaa 218  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11974206 cattgtgctttttggtttcaacattctcattcattttcgagattcatgctttttggtttcaacattctaactcaatttcgagattcatactaaa 11974299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 11974374 - 11974439
Alignment:
Q  293 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaacttc 359  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11974374 gatctaagtcttaagaccggatcaatttctaata-tttttcataggtacaacaattaaacaaacttc 11974439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 191656 - 191524
Alignment:
Q  28 attgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatctctactatacat 127  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||||||| |||||| |||||||||| | |||||||||||| || |||||||     
T  191656 attgcttcgtacatgtttgctataaatattgtgtttgaggttcacactttttacatcatttttagttacaactcataattttcatatcactgctataca- 191558  T
Q  128 tgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
           ||||||||||| ||||||||||||||||||||||    
T  191557 -------tttggtttcaaaattctcactcaatttcgagatt 191524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 191440 - 191374
Alignment:
Q  293 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaacttc 359  Q
    ||||||| |||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  191440 gatctaattcttaataccggatcaattcctaatgttttttcattggtacaacaattaaacaaacttc 191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 181838 - 181694
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttca--tatctctactat 123  Q
    ||||||||| |||||||||| ||||||||||||||||| || | |||| |||| ||| | |||| |||||||||| |||| |||||  | | | | ||||    
T  181838 tgattgcttaatacatgttgactataaatattgtgtttgagacccacaattttcacaacgttttgagttacaactcacaaatttcacttctttttgctat 181739  T
Q  124 acattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  181738 aaattttgttttttagtttcaacattttcacacaatttcgagatt 181694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 188778 - 188634
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatc--tctactat 123  Q
    ||||||||| |||||||||| ||||| ||||||||||| || | |||| |||| | | | |||| |||||||||| |||| ||||| |||  | | ||||    
T  188778 tgattgcttaatacatgttgactatagatattgtgtttgagacccacaattttcaaaacgttttgagttacaactcacaaatttcacatctttttgctat 188679  T
Q  124 acattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  188678 aaattttgttttttagtttcaacattttcacacaatttcgagatt 188634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 11818636 - 11818504
Alignment:
Q  28 attgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatctctactatacat 127  Q
    |||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||| | |||||| ||||| || ||||||      
T  11818636 attgcttcgtacatgtttgctataaatattgtgtttgagactcacactttttacaccattttcagttacaactcataatttttatatcactgctatac-- 11818539  T
Q  128 tgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
          |||||||||||| ||||||||||||||||||||||    
T  11818538 ------ttttggtttcaaaattctcactcaatttcgagatt 11818504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 41758367 - 41758515
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatctctactata 124  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||| ||||| |||| | |||||||| |||  |  ||||    
T  41758367 gtgattgcttcatacatattggttataaatattgtgtttgaggctcacacttttcacatcattttgagttataactcataattttcacatcattgttata 41758466  T
Q  125 cattgtgctttttggtttcaacattctcactcaatttcgagattaatgct 174  Q
      |||||||||||||||| || ||| ||||||||||| ||| || |||||    
T  41758467 agttgtgctttttggttttaa-attttcactcaattttgagcttgatgct 41758515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 11818420 - 11818354
Alignment:
Q  293 gatctaagtcttaagaccggatcaatttctaatattttttcataggtacaacaattaaacaaacttc 359  Q
    ||||||| | |||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  11818420 gatctaatttttaataccggatcaattcctaatgttttttcattggtacaacaattaaacaaacttc 11818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 11374630 - 11374486
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttca--tatctctactat 123  Q
    |||||||||  ||||||||| ||||||||||||||||| || ||| || |||| |||   |||| |||||||||| |||| |||||  | | | | ||||    
T  11374630 tgattgcttggtacatgttgactataaatattgtgtttgagactcgcaattttcacaatgttttgagttacaactcacaaatttcacgtctttttgctat 11374531  T
Q  124 acattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    | ||| || |||||  |||||||||| |||| |||||||||||||    
T  11374530 aaattttgttttttaatttcaacattttcacacaatttcgagatt 11374486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 33856385 - 33856533
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatctctactata 124  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||| ||||| |||| | |||||||| |||  |  ||||    
T  33856385 gtgattgcttcatacatattggttataaatattgtgtttgaggctcacacttttcacatcattttgagttataactcataattttcacatcattgttata 33856484  T
Q  125 cattgtgctttttggtttcaacattctcactcaatttcgagattaatgct 174  Q
      |||||||||||||||| || ||| ||||||||||| ||| || |||||    
T  33856485 agttgtgctttttggttttaa-attttcactcaattttgagcttgatgct 33856533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 14106634 - 14106720
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttca 111  Q
    ||||||||||| ||||| |||| |||||||||||| ||| |||||||||||||| ||| |||||| ||||| |||| | ||||||||    
T  14106634 gtgattgcttcgtacatattggttataaatattgtatttgaggctcacacttttcacatcattttgagttataactcataattttca 14106720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 31926684 - 31926536
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatctctactata 124  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||| ||||| |||| | |||||||| |||  |  ||||    
T  31926684 gtgattgcttcatacatattggttataaatattgtgtttgaggctcacacttttcacatcattttgagttataactcataattttcacatcattgttata 31926585  T
Q  125 cattgtgctttttggtttcaacattctcactcaatttcgagattaatgct 174  Q
      |||||||||||||||| || ||| ||||||||||| ||| || |||||    
T  31926584 agttgtgctttttggttttaa-attttcactcaattttgagcttgatgct 31926536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 37525368 - 37525431
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccatttt 89  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
T  37525368 tgattgcttcatacatattggctataaatattgtgtttgaggctcacacttttcacaccatttt 37525431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 14289268 - 14289338
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagtta 95  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||||||| |||| |||||| ||| |||||    
T  14289268 gtgattccttcatacatgttggctataaatattatgtttgaggctcacagttttcacaccactttgagtta 14289338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 2255887 - 2255950
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccatttt 89  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  2255887 tgattgcttcatacatgttggctataaatattgtgtttgaggctcacacttttcacaccatttt 2255950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 3698306 - 3698162
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatc--tctactat 123  Q
    ||||||||| |||||||||| ||||| ||||||||||| || | |||| |||| | | | |||| |||||||||| |||| ||||| |||  | ||||||    
T  3698306 tgattgcttaatacatgttgactatagatattgtgtttgagacccacaattttcaaaacgttttgagttacaactcacaaatttcacatctttttactat 3698207  T
Q  124 acattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  3698206 aaattttgttttttagtttcaacattttcacacaatttcgagatt 3698162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 3695944 - 3695800
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatc--tctactat 123  Q
    ||||||||| |||||||||| ||||| ||||||||||| || | |||| |||| | | | |||| |||||||||| |||| ||||| |||  | | ||||    
T  3695944 tgattgcttaatacatgttgactatagatattgtgtttgagacccacaattttcaaaacgttttgagttacaactcacaaatttcacatctttttgctat 3695845  T
Q  124 acattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  3695844 aaattttgttttttagtttcaacattttcacacaatttcgagatt 3695800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 3870844 - 3870988
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttcatatc--tctactat 123  Q
    ||||||||| |||||||||| ||||| ||||||||||| || | |||| |||| | | | |||| |||||||||| |||| ||||| |||  | | ||||    
T  3870844 tgattgcttaatacatgttgactatagatattgtgtttgagacccacaattttcaaaacgttttgagttacaactcacaaatttcacatctttttgctat 3870943  T
Q  124 acattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  3870944 aaattttgttttttagtttcaacattttcacacaatttcgagatt 3870988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 28968362 - 28968299
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccatttt 89  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  28968362 tgattgcttcatacatgttggctataaatattgtgtttgaggctcacacttttcacaccatttt 28968299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 16046857 - 16046707
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagt--tacaacttacaattttcatatctctacta 122  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||| |||  || |||| | |||||||| |||  |  ||    
T  16046857 gtgattgcttcatacatattggttataaatattgtgtttgaggctcacacttttcacatcattttgagttatataactcataattttcacatcattgtta 16046758  T
Q  123 tacattgtgctttttggtttcaacattctcactcaatttcgagattaatgct 174  Q
    ||  ||||||||||||||||||| |||  |||||||||| ||| || |||||    
T  16046757 taagttgtgctttttggtttcaa-atttacactcaattttgagcttgatgct 16046707  T

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Target: scaffold0012 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 55284 - 55347
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccatttt 89  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||    
T  55284 tgattgcttcatacatgatggctataaatattgtgtttgaggctcacacttttcacaccatttt 55347  T

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Target: scaffold0796 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 8 - 152
Alignment:
Q  26 tgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttca--tatctctactat 123  Q
    ||||||||| |||||||||| ||||||||||||||||| || | |||| |||| ||| | |||| |||||||||| |||| |||||  | | | | ||||    
T  8 tgattgcttgatacatgttgactataaatattgtgtttgagacccacaattttcacaacgttttgagttacaactcacaaatttcacttctttttgctat 107  T
Q  124 acattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    | ||| || ||||| ||||||||||| |||| |||||||||||||    
T  108 aaattttgttttttagtttcaacattttcacacaatttcgagatt 152  T

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Target: scaffold0356 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 4058 - 4144
Alignment:
Q  25 gtgattgcttcatacatgttggctataaatattgtgtttcaggctcacactttttacaccattttaagttacaacttacaattttca 111  Q
    ||||||||||| ||||| |||| |||||||||||| ||| |||||||||||||| ||| |||||| ||||| |||| | ||||||||    
T  4058 gtgattgcttcgtacatattggttataaatattgtatttgaggctcacacttttcacatcattttgagttataactcataattttca 4144  T

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Target: scaffold1940 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 519 - 471
Alignment:
Q  120 ctatacattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    ||||| |||||||||||  ||||||||||| |||| |||||||||||||    
T  519 ctataaattgtgcttttaagtttcaacattttcacacaatttcgagatt 471  T

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Target: scaffold0281 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 22365 - 22413
Alignment:
Q  120 ctatacattgtgctttttggtttcaacattctcactcaatttcgagatt 168  Q
    ||||| |||||||||||  ||||||||||| |||| |||||||||||||    
T  22365 ctataaattgtgcttttaagtttcaacattttcacacaatttcgagatt 22413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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