View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1391_high_1 (Length: 557)

Name: NF1391_high_1
Description: NF1391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1391_high_1
NF1391_high_1
[»] chr8 (1 HSPs)
chr8 (9-528)||(36271997-36272514)
[»] chr4 (2 HSPs)
chr4 (215-259)||(8472548-8472592)
chr4 (207-241)||(19390419-19390453)
[»] chr5 (2 HSPs)
chr5 (216-259)||(10809547-10809590)
chr5 (215-259)||(10214046-10214090)
[»] scaffold0392 (1 HSPs)
scaffold0392 (219-272)||(2051-2102)
[»] chr6 (1 HSPs)
chr6 (418-471)||(2226863-2226916)
[»] chr2 (1 HSPs)
chr2 (216-252)||(14408745-14408781)
[»] chr1 (1 HSPs)
chr1 (219-255)||(13810203-13810239)


Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 528
Target Start/End: Original strand, 36271997 - 36272514
Alignment:
Q  9 cacagaaatgacatgtcaaagaaatacttcagttaaaggcattactaaacatctcagtctgcaacagaccaacacggccttcacatcaaaagcaatttag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36271997 cacagaaatgacatgtcaaagaaatacttcagttaaaggcattactaaacatctcagtttgcaacagaccaacacggccttcacatcaaaagcaatttag 36272096  T
Q  109 catacatcattgaaaaagggaaccaagaatagggctattatccagttgaattcttttcaagtgagttaatattttgaataatggtgagtttgacaagctc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36272097 catacatcattgaaaaagggaaccaagaatagggctattatccagttgaattcttttcaagtgagttaatattttgaataatggtgagtttgacaagctc 36272196  T
Q  209 acaatagcaccgtgattttgttgaagcttcaaagcgtagcttttgccaaaaaatcacggtgacaaaaggtgattctgtcaagccactaatccaaacatgc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  36272197 acaatagcaccgtgattttgttgaagcttcaaagcgtagcttttgccataa--tcacggtgacaaaaggtgattctgtcaagccactaatccaaacatgc 36272294  T
Q  309 actcgaatgaccgagggatgctttgacctcctttcaaaggaaactaatttgtgaaattctaaaatcatgtacaattttacataacatctcatttaagcac 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  36272295 actcgaatgaccgagggatgctttgacctcctttcaaaggaaactaatttgtgaaattctaaaatcatgtacagttgtacataacatctcatttaagcac 36272394  T
Q  409 acaacattaaggaaaatgctttgtgggacgaaacgaaagtaaacgagggacgtggcaattgcttagccaatttttatacaaccactactgttttattcca 508  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36272395 acaatattaaggaaaatgctttgtgggaagaaacgaaagtaaacgagggacgtggcaattgcttagccaatttttatacaaccactactgttttattcca 36272494  T
Q  509 ctaaaaccgggagttacatc 528  Q
    ||||||||||||||||||||    
T  36272495 ctaaaaccgggagttacatc 36272514  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 8472592 - 8472548
Alignment:
Q  215 gcaccgtgattttgttgaagcttcaaagcgtagcttttgccaaaa 259  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||    
T  8472592 gcactgtgattttgttgaagctacaaagtgtagcttttgccaaaa 8472548  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 19390419 - 19390453
Alignment:
Q  207 tcacaatagcaccgtgattttgttgaagcttcaaa 241  Q
    ||||| |||||||||||||||||||||||||||||    
T  19390419 tcacagtagcaccgtgattttgttgaagcttcaaa 19390453  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 10809547 - 10809590
Alignment:
Q  216 caccgtgattttgttgaagcttcaaagcgtagcttttgccaaaa 259  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  10809547 caccgtgattttgttgaagcttcaaatcgtagctcttgtcaaaa 10809590  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 10214046 - 10214090
Alignment:
Q  215 gcaccgtgattttgttgaagcttcaaagcgtagcttttgccaaaa 259  Q
    |||||||||| ||||||| ||| ||||| ||||||||||||||||    
T  10214046 gcaccgtgatgttgttgatgctacaaagtgtagcttttgccaaaa 10214090  T

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Target: scaffold0392 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 2051 - 2102
Alignment:
Q  219 cgtgattttgttgaagcttcaaagcgtagcttttgccaaaaaatcacggtgaca 272  Q
    |||||||||||||||||| ||||| |||||||||||   |||||||||||||||    
T  2051 cgtgattttgttgaagctacaaagtgtagcttttgc--gaaaatcacggtgaca 2102  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 2226916 - 2226863
Alignment:
Q  418 aggaaaatgctttgtgggacgaaacgaaagtaaacgagggacgtggcaattgct 471  Q
    ||||||||||||||| |||||||| |||  | ||||||||||||| ||||||||    
T  2226916 aggaaaatgctttgtaggacgaaatgaacatcaacgagggacgtgccaattgct 2226863  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 14408781 - 14408745
Alignment:
Q  216 caccgtgattttgttgaagcttcaaagcgtagctttt 252  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  14408781 caccgtgattttgttgaagctccaaagtgtagctttt 14408745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 13810203 - 13810239
Alignment:
Q  219 cgtgattttgttgaagcttcaaagcgtagcttttgcc 255  Q
    |||||||||||||||||||||||| |||| |||||||    
T  13810203 cgtgattttgttgaagcttcaaagtgtagtttttgcc 13810239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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