View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391_low_3 (Length: 512)
Name: NF1391_low_3
Description: NF1391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 13 - 483
Target Start/End: Complemental strand, 7106759 - 7106289
Alignment:
| Q |
13 |
aatataaagtatttatggtaacatttcctttgattcaatacctcctactttggaattcttaaaaaatgcatttaagatactcaatatttgtatgatggca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7106759 |
aatataaagtatttatggtaacatttcctttgattcaatacttcctactttggaattcttaaaaaatgcttttaagatactcaatatttgtatgatggca |
7106660 |
T |
|
| Q |
113 |
gctgaatccctttgcctatccaacaataactcagttgttgaattaatctgatcaccgagagaccaacactatcaaccatcagattaatccgacgactgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7106659 |
gctgaatccctttgcctatccaacaataactcagttgttgaattaatctgatcaccgagagaccaacactatcaaccatcagattaatccgacgactgat |
7106560 |
T |
|
| Q |
213 |
atttgattcgaggaaatggaagggctagacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatgctaactttcaaattt |
312 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7106559 |
atttgattcgaggaaacggaagggctagacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatgctaactttcaaattt |
7106460 |
T |
|
| Q |
313 |
tcaacatggaaaagttccggtcaaatggatatgatcaagggtgctttcaagcccatacttaagtaccgcctggtaacccgatctgaatccatctccatag |
412 |
Q |
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| T |
7106459 |
tcaacatggaaaagttccggtcaaatggatatgatcaagggtgctttcgagcccatacttaagtaccgcctggtaacccgatctgaatccatctccatag |
7106360 |
T |
|
| Q |
413 |
gctggtgaggtatccgactcaatctggtttttgaaaaactcacaaagtttcttctcaaaatcagacctttt |
483 |
Q |
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| T |
7106359 |
gctggtgaggtatccgactcaatctggtttttgaaaaactcgcaaagtttcttctcaaaatcagacctttt |
7106289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 479
Target Start/End: Complemental strand, 7094547 - 7094076
Alignment:
| Q |
13 |
aatataaagtatttatggtaacatttcctttgattcaatacctcctactttggaattcttaaaaaatgcatttaagatactcaatatttgt--------- |
103 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||||| ||||||||||||| |
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| T |
7094547 |
aataaaaagtatttatggtaacatttcctttgattcaatacctcctattttggaattcttagaaagtgc-tttaagacactcaatatttgtcaattattt |
7094449 |
T |
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| Q |
104 |
--atgatggcagctgaatccctttgcctatccaacaataactcagttgttgaattaatctgatcaccgagagaccaacactatcaa----ccatcagatt |
197 |
Q |
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||||||||||||||||| | || |||||||||||| |||||||| ||||||||||||| |||||| ||||||||| |||||||| |||||| ||| |
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| T |
7094448 |
gtatgatggcagctgaatctcattacctatccaacaaaaactcagtcgttgaattaatctaatcaccaagagaccaatactatcaatcaaccatcatatt |
7094349 |
T |
|
| Q |
198 |
aatccgacgactgatatttgattcgaggaaatggaagggctagacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatg |
297 |
Q |
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|||||||||||||||||| |||| |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
7094348 |
aatccgacgactgatattcgattggagg---------ggctagacaggtaacactccggaccatgatgaggcattggttcatatgggcgaaaaaattatg |
7094258 |
T |
|
| Q |
298 |
ctaactttcaaattttcaacatggaaaagttccggtcaaatggatatgatcaagggtgctttcaagcccatacttaagtaccgcctggtaacccgatctg |
397 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
7094257 |
ctagctttcaaattttcaacatggaaaagttccggtcaaatggatatgatcaagggtacttttgagcccatacttaagtaccgcctggtaacccgatctg |
7094158 |
T |
|
| Q |
398 |
aatccatctccataggctggtgaggtatccgactcaatctggtttttgaaaaactcacaaagtttcttctcaaaatcagacc |
479 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
7094157 |
aatccatctccataggctggtgaggtatctgactcaatctggtttttgaaaaactcgccaagtttcttctcaaaatcagacc |
7094076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 479
Target Start/End: Original strand, 33405917 - 33406035
Alignment:
| Q |
361 |
aagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctggtttttgaaaaactcacaaagt |
460 |
Q |
| |
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|||||||||||| || || ||||||| |||| ||| |||||||||||||||||||||||| |||| | ||||||||||| ||| ||||| | || |||| |
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| T |
33405917 |
aagcccatacttgagcactgcctggttaccctctctaaatccatctccataggctggtgagctatcggtctcaatctggtgtttaaaaaatttaccaagt |
33406016 |
T |
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| Q |
461 |
ttcttctcaaaatcagacc |
479 |
Q |
| |
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| |||||||||||| |||| |
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| T |
33406017 |
tccttctcaaaatcggacc |
33406035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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