View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391_low_4 (Length: 461)
Name: NF1391_low_4
Description: NF1391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 34925939 - 34926114
Alignment:
| Q |
22 |
aaagaactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcaga |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925939 |
aaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcaga |
34926038 |
T |
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| Q |
122 |
cttagtcctggcatggtatttaacatcctttcgcatactctcatacgagaactcttccctggtcttcttctggttt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926039 |
cttagtcctggcatggtatttaacatcctttcgcatactctcatacgagaactcttccctggtcttcttctggttt |
34926114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 34930379 - 34930554
Alignment:
| Q |
22 |
aaagaactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcaga |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34930379 |
aaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcaga |
34930478 |
T |
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| Q |
122 |
cttagtcctggcatggtatttaacatcctttcgcatactctcatacgagaactcttccctggtcttcttctggttt |
197 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34930479 |
cttagtcctggcatggtatttgacatcctttcgcatactctcatatgagaactcttccctggtcttcttctggttt |
34930554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 34935895 - 34936070
Alignment:
| Q |
22 |
aaagaactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcaga |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34935895 |
aaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcaga |
34935994 |
T |
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| Q |
122 |
cttagtcctggcatggtatttaacatcctttcgcatactctcatacgagaactcttccctggtcttcttctggttt |
197 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
34935995 |
cttagtcctggcatggtatttgacatcctttcgcatactctcaaacgagaactcttccatggtcttcttctggttt |
34936070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 34926183 - 34926261
Alignment:
| Q |
267 |
gtttgtttgatacatgttatctcaaaaacaaacttgcctcattgggataatcccaaggatgatggtagggtgttgtttt |
345 |
Q |
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| T |
34926183 |
gtttgtttgatacatgttatctcaaaaacaaacttgcctcattgggataatcccaaggatgatggtagggtgttgtttt |
34926261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 34930623 - 34930701
Alignment:
| Q |
267 |
gtttgtttgatacatgttatctcaaaaacaaacttgcctcattgggataatcccaaggatgatggtagggtgttgtttt |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34930623 |
gtttgtttgatacatgttatctcaaaaacaaacttgcctcattgggataatcccaaggatgatggtagggtgttgtttt |
34930701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 34936139 - 34936217
Alignment:
| Q |
267 |
gtttgtttgatacatgttatctcaaaaacaaacttgcctcattgggataatcccaaggatgatggtagggtgttgtttt |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34936139 |
gtttgtttgatacatgttatctcaaaaacaaacttgcctcattgggataatcccaaggatgatggtagggtgttgtttt |
34936217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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