View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1391_low_5 (Length: 440)
Name: NF1391_low_5
Description: NF1391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1391_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 214 - 431
Target Start/End: Original strand, 10984354 - 10984571
Alignment:
| Q |
214 |
ttataataaacttcattatttaaaattgtctatttagaacatacagaagtaaaaattgaaaaatatgatgctatatatttcaatcaatatatttcacnnn |
313 |
Q |
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| T |
10984354 |
ttataataaacttcattatttaaaattgtctatttggaacatacagaagtaaaaattgaaaaatatgatgctatatatttcaatcaatatatttcacttt |
10984453 |
T |
|
| Q |
314 |
nnnncttcgaaatatatttatctaaccagataactttttaggtcatcagtgtcttttgctattaaccaacaggttcatccaataaagatggtgctatgaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10984454 |
ttttcttcgaaatatatttatctaaccagataactttttaggtcatcagtgtcttttgctattaaccaacaggttcatccaataaagatggtgctatgaa |
10984553 |
T |
|
| Q |
414 |
gccaattcacagaataat |
431 |
Q |
| |
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|||||||||||||||||| |
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| T |
10984554 |
gccaattcacagaataat |
10984571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 10984169 - 10984288
Alignment:
| Q |
29 |
attgtcactcctcagaaaatcttcaatgccatcatacacagataaatgttcccgtcgacatttgtagattaataatacaatgatgcaaggcgctccaagg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10984169 |
attgtcactcctcagaaaatcttcaatgccatcatacacagataaatgttcccgtcgacatttgtagattaataatacaatgatgcaaggcgctccaagg |
10984268 |
T |
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| Q |
129 |
acaaatttaacaatgctgaa |
148 |
Q |
| |
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| T |
10984269 |
acaaatttaacaatgctgaa |
10984288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 11004464 - 11004397
Alignment:
| Q |
42 |
agaaaatcttcaatgccatcatacacagataaatgttcccgtcgacatttgtagattaataatacaat |
109 |
Q |
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| T |
11004464 |
agaaaatcttcgatgccatcatacacagataaatgtttttgtcgccatttgtagattaataatacaat |
11004397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 11011545 - 11011664
Alignment:
| Q |
29 |
attgtcactcctcagaaaatcttcaatgccatcatacacagataaatgttcccgtcgacatttgtagattaataatacaatgatgcaaggcgctccaagg |
128 |
Q |
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||||||||| || ||||||||||| | ||| ||||||| ||||| ||| | |||||| ||||||||||||||||||||||| || || | |||||||| |
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| T |
11011545 |
attgtcactactaagaaaatcttcgacgccgtcatacatagatagatgcttccgtcgccatttgtagattaataatacaatcatacatagtgctccaaga |
11011644 |
T |
|
| Q |
129 |
acaaatttaacaatgctgaa |
148 |
Q |
| |
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|||||||||| || |||||| |
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| T |
11011645 |
acaaatttaaaaaggctgaa |
11011664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 11033836 - 11033947
Alignment:
| Q |
29 |
attgtcactcctcagaaaatcttcaatgccatcatacacagataaatgttcccgtcgacatttgtagattaataatacaatgatgcaaggcgctccaagg |
128 |
Q |
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|
||||||||| | ||||||||||| ||||||||||||| |||| ||||| |||||| ||||||||||||| || | ||||||| | ||||||||||| |
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| T |
11033836 |
attgtcactacgtagaaaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaaga |
11033935 |
T |
|
| Q |
129 |
acaaatttaaca |
140 |
Q |
| |
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|||||||||||| |
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| T |
11033936 |
acaaatttaaca |
11033947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 10915244 - 10915353
Alignment:
| Q |
29 |
attgtcactcctcagaaaatcttcaatgccatcatacacagataaatgttcccgtcgacatttgtagattaataatacaatgatgcaaggcgctccaagg |
128 |
Q |
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|
||||||||| | ||||| ||||| | ||| ||||||| ||| ||||||| ||||| |||||||||||||||||| ||||||| || ||||||||||| |
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| T |
10915244 |
attgtcacttcgtagaaagtcttcgacgccgtcatacatagagaaatgtttccgtctccatttgtagattaataatgcaatgatacatggcgctccaaga |
10915343 |
T |
|
| Q |
129 |
acaaatttaa |
138 |
Q |
| |
|
|||||||||| |
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|
| T |
10915344 |
acaaatttaa |
10915353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 11027856 - 11027763
Alignment:
| Q |
214 |
ttataataaacttcattatttaaaattgtctatttagaacatacagaagtaaaaattgaaaaatatgatgctatatatttc-aatcaatatatt |
306 |
Q |
| |
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|||| |||||||| |||||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
11027856 |
ttattataaacttgattatttattattttttgtttagaacataacgaagtgaaaattgaaaaatatgatgcgatatatttctaatcaatatatt |
11027763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 11008387 - 11008494
Alignment:
| Q |
33 |
tcactcctcagaaaatcttcaatgccatcatacacagataaatgttcccgtcgacatttgtagattaataatacaatgatgcaaggcgctccaaggacaa |
132 |
Q |
| |
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||||| || ||||||||||| | ||||||||||| |||| ||||| | ||| ||||| | |||||||||||||||||| | ||| |||||| |||| |
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| T |
11008387 |
tcactacttagaaaatcttcgacgccatcatacatagattgatgtttctttcgccattttttgattaataatacaatgataaatggcaatccaagaacaa |
11008486 |
T |
|
| Q |
133 |
atttaaca |
140 |
Q |
| |
|
|||||||| |
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|
| T |
11008487 |
atttaaca |
11008494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 11033978 - 11034019
Alignment:
| Q |
260 |
aagtaaaaattgaaaaatatgatgctatatatttcaatcaat |
301 |
Q |
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|||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
11033978 |
aagtgaaaactgaaaaatatgatgctatacatttcaatcaat |
11034019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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